Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 5.3e-187 657.5 329 100.0
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 2.8e-156 555.4 320 85.9
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 2.8e-156 555.4 320 85.9
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.4e-155 552.4 314 86.9
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.4e-155 552.4 319 86.2
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.2e-154 550.1 319 86.5
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.2e-154 550.1 319 85.9
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.6e-154 549.7 319 86.2
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 2.0e-154 549.3 322 85.4
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 2.0e-154 549.3 323 85.4
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 2.7e-154 548.9 319 85.6
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 5.9e-154 547.7 319 85.3
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 7.7e-154 547.4 318 85.8
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 1.0e-153 547.0 316 87.0
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.7e-153 546.2 317 86.4
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.7e-153 546.2 319 85.6
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.7e-153 546.2 317 85.5
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 1.7e-153 546.2 315 86.7
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 8.6e-153 543.9 316 83.9
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.5e-152 543.1 317 84.9
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.9e-152 542.7 315 84.8
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.9e-152 542.7 315 85.7
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 2.5e-152 542.3 316 85.1
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 2.5e-152 542.3 319 85.3
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 3.2e-152 542.0 318 86.5
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 3.2e-152 542.0 318 84.6
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 3.2e-152 542.0 315 85.4
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 5.5e-152 541.2 318 87.1
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 5.5e-152 541.2 312 86.2
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 9.5e-152 540.4 317 86.1
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 9.5e-152 540.4 314 85.7
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 9.5e-152 540.4 330 82.4
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.2e-151 540.0 314 85.4
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.1e-151 539.3 323 83.9
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 2.1e-151 539.3 321 84.1
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.1e-151 539.3 314 86.3
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.6e-151 538.5 317 84.2
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 4.7e-151 538.1 321 84.1
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 4.7e-151 538.1 320 83.8
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 4.7e-151 538.1 317 85.2
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.7e-151 538.1 317 84.5
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 8.0e-151 537.3 320 85.3
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.0e-150 537.0 335 81.2
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.0e-150 537.0 321 86.0
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.0e-150 537.0 317 84.5
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.4e-150 536.6 314 84.7
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.8e-150 536.2 316 85.4
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 2.3e-150 535.8 325 83.1
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 2.3e-150 535.8 318 86.2
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 2.3e-150 535.8 314 84.1
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.3e-150 535.8 313 85.6
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 3.0e-150 535.4 318 85.8
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 3.0e-150 535.4 320 83.8
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 4.0e-150 535.0 330 82.1
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 4.0e-150 535.0 319 85.9
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 4.0e-150 535.0 317 85.2
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 4.0e-150 535.0 317 85.2
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 5.2e-150 534.6 320 82.8
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 6.8e-150 534.3 318 84.3
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.8e-150 534.3 313 84.7
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.8e-150 534.3 313 84.7
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.8e-150 534.3 313 84.7
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 8.8e-150 533.9 318 85.8
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 8.8e-150 533.9 323 83.0
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 8.8e-150 533.9 318 82.7
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 8.8e-150 533.9 320 84.7
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 8.8e-150 533.9 318 83.0
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.2e-149 533.5 317 84.9
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.5e-149 533.1 316 83.2
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.5e-149 533.1 315 85.1
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.6e-149 532.3 316 83.2
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 2.6e-149 532.3 322 82.3
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.3e-148 530.0 314 85.7
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 2.2e-148 529.3 322 82.3
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 2.8e-148 528.9 317 83.6
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 3.7e-148 528.5 322 82.0
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 3.7e-148 528.5 331 81.3
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 4.9e-148 528.1 322 82.3
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 4.9e-148 528.1 322 82.3
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 4.9e-148 528.1 322 82.3
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 4.9e-148 528.1 322 82.3
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 4.9e-148 528.1 323 82.7
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 6.3e-148 527.7 322 82.3
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.8e-147 526.2 262 96.2
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 2.4e-147 525.8 329 80.2
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 2.4e-147 525.8 320 83.1
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.4e-147 525.8 317 83.3
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.4e-147 525.8 317 83.3
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.1e-147 525.4 325 81.5
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 3.1e-147 525.4 283 89.4
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 5.4e-147 524.6 325 81.2
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.4e-147 524.6 314 82.8
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 5.4e-147 524.6 287 89.5
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 5.4e-147 524.6 317 84.2
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 7.0e-147 524.2 320 84.1
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.2e-146 523.5 335 79.7
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.2e-146 523.5 318 82.4
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.6e-146 523.1 322 81.4
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.6e-146 523.1 322 81.4
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 3.5e-146 521.9 262 95.0
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 4.5e-146 521.5 322 81.4
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 5.9e-146 521.2 318 82.7
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 7.8e-146 520.8 315 82.9
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 6.6e-145 517.7 318 81.1
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.5e-144 516.5 318 81.4
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.3e-144 515.4 262 93.9
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 4.3e-144 515.0 326 80.4
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 1.6e-143 513.1 317 80.4
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.8e-143 512.3 276 90.2
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 2.8e-143 512.3 262 93.5
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 4.7e-143 511.5 309 82.8
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 2.6e-141 505.8 275 89.5
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.7e-140 503.1 278 86.0
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 5.4e-139 498.0 285 84.2
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 9.2e-139 497.3 261 89.7
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.0e-137 493.8 283 83.7
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 3.0e-137 492.3 262 88.9
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 1.6e-135 486.5 245 94.7
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 8.0e-135 484.2 299 81.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.6e-130 469.9 290 82.4
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.3e-126 456.1 319 74.0
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 4.4e-125 451.8 320 74.1
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.2e-124 449.5 260 80.0
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.9e-123 446.4 260 80.4
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.4e-118 430.3 320 71.6
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 5.2e-118 428.3 258 78.3
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.5e-114 415.6 261 74.3
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.0e-113 412.5 279 72.8
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 7.6e-109 397.9 275 75.3
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.4e-102 377.1 318 61.3
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 9.0e-102 374.4 228 77.6
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 7.4e-96 354.8 319 61.4
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 5.1e-89 332.0 190 84.2
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.0e-84 317.8 160 93.8
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 7.0e-46 188.7 119 78.2
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.0e-33 148.3 98 74.5
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 2.8e-26 123.6 148 50.0
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 6.1e-26 122.5 94 68.1
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.0e-24 117.5 71 74.6
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 9.2e-22 108.6 69 75.4
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 1.9e-19 100.9 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 1.2e-18 98.2 69 72.5
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 3.4e-16 90.1 44 90.9
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 4.4e-16 89.7 44 88.6
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 6.0e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 2.5e-11 73.9 39 89.7
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.5e-08 64.7 29 96.6
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.4e-08 63.2 29 96.6
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 5.8e-08 62.8 72 51.4
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 1.1e-06 58.5 53 58.5


User provided reference genes

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