Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 1.8e-155 552.7 317 100.0
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.2e-135 486.9 303 91.4
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 2.9e-134 482.3 299 86.6
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 3.8e-134 481.9 301 86.7
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.1e-133 480.3 298 89.9
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.1e-133 480.3 299 89.6
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 3.3e-133 478.8 299 91.0
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.2e-132 476.9 299 82.3
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 2.8e-132 475.7 300 83.3
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 6.1e-132 474.6 299 90.0
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.4e-131 473.4 303 83.8
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.4e-131 473.4 299 85.3
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 3.0e-131 472.2 303 83.5
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 3.0e-131 472.2 299 85.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 4.0e-131 471.9 298 85.2
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 5.2e-131 471.5 303 83.8
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 5.2e-131 471.5 303 83.8
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 5.2e-131 471.5 298 87.2
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.7e-129 466.5 300 84.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.7e-129 466.5 303 82.8
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.7e-129 466.5 303 79.2
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.7e-129 466.5 298 83.6
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.7e-129 466.5 301 87.7
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 2.2e-129 466.1 303 83.2
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 6.4e-129 464.5 299 86.6
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 6.4e-129 464.5 300 86.7
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.4e-128 463.4 303 81.5
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 2.4e-128 462.6 303 83.8
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 4.1e-128 461.8 301 79.1
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 5.4e-128 461.5 300 83.7
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 7.0e-128 461.1 298 82.9
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 9.2e-128 460.7 299 87.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.2e-127 460.3 299 80.3
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.6e-127 459.9 303 83.2
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 2.0e-127 459.5 299 81.3
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 2.0e-127 459.5 299 77.9
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 3.5e-127 458.8 301 78.7
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 5.9e-127 458.0 301 81.1
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.7e-126 456.4 300 80.7
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.7e-126 456.4 299 78.6
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.3e-126 456.1 299 80.3
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.3e-126 456.1 299 78.3
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.3e-126 456.1 300 81.7
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 5.0e-126 454.9 299 81.9
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 6.6e-126 454.5 294 82.3
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.5e-125 453.4 299 81.6
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.9e-125 453.0 301 84.1
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.5e-125 452.6 298 81.9
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.3e-125 451.8 294 80.6
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 4.3e-125 451.8 305 82.0
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 4.3e-125 451.8 305 82.0
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 4.3e-125 451.8 305 82.0
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 5.6e-125 451.4 304 84.9
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 7.3e-125 451.1 300 79.0
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 9.5e-125 450.7 303 77.6
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 9.5e-125 450.7 300 80.3
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.2e-124 450.3 300 79.7
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-124 450.3 299 80.6
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.2e-124 450.3 299 80.6
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.2e-124 450.3 299 78.6
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.2e-124 450.3 300 81.0
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.2e-124 450.3 299 84.6
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.6e-124 449.9 302 79.5
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 6.2e-124 448.0 299 78.6
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 6.2e-124 448.0 300 83.7
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 8.0e-124 447.6 303 81.5
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.4e-123 446.8 303 79.9
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.4e-123 446.8 299 80.6
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.8e-123 446.4 299 78.3
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.8e-123 446.4 302 78.8
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 3.1e-123 445.7 301 78.4
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 5.2e-123 444.9 303 81.5
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 6.8e-123 444.5 303 79.5
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.2e-122 443.7 303 75.9
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 1.5e-122 443.4 303 81.2
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.5e-122 443.4 303 79.2
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 2.0e-122 443.0 302 79.1
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 4.4e-122 441.8 302 79.1
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 4.4e-122 441.8 302 79.1
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 4.4e-122 441.8 302 79.1
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 9.8e-122 440.7 303 79.2
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 4.9e-121 438.3 302 78.8
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 8.3e-121 437.6 299 76.3
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.1e-120 437.2 299 76.3
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 3.2e-120 435.6 303 75.2
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 7.0e-120 434.5 298 81.9
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.2e-119 433.7 302 82.5
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 1.2e-119 433.7 283 81.3
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 4.6e-119 431.8 300 80.3
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 7.8e-119 431.0 300 80.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 1.7e-118 429.9 302 82.1
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 5.0e-118 428.3 299 74.6
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 8.6e-118 427.6 300 81.7
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.1e-117 427.2 297 82.8
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 1.9e-117 426.4 302 72.8
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 5.6e-117 424.9 300 75.7
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.6e-116 423.3 300 80.3
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.1e-116 422.9 301 74.4
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 3.6e-116 422.2 299 77.3
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 8.1e-116 421.0 299 76.6
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-115 420.6 299 76.6
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.8e-115 419.9 301 79.1
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 8.9e-115 417.5 301 79.4
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-114 417.2 302 78.8
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.5e-114 416.8 299 77.9
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.5e-114 416.8 299 77.9
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.5e-114 416.8 299 77.9
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.0e-114 416.4 299 72.6
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 9.8e-114 414.1 300 75.0
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 4.0e-107 392.1 311 68.5
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 8.4e-105 384.4 299 67.6
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 4.6e-103 378.6 301 66.8
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 8.6e-102 374.4 278 74.1
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 4.0e-99 365.5 299 64.2
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 8.9e-99 364.4 288 69.8
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 2.4e-96 356.3 302 69.5
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 1.9e-93 346.7 322 64.3
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 7.3e-93 344.7 195 85.6
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.8e-89 332.4 300 55.7
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.8e-89 332.4 249 79.1
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 5.8e-82 308.5 296 59.1
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 9.9e-82 307.8 249 67.1
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 2.9e-81 306.2 299 60.9
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.9e-80 303.5 300 58.0
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.0e-78 296.2 300 53.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 1.5e-69 267.3 299 52.2
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.6e-68 263.8 134 97.0
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.0e-62 243.0 271 62.0
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.2e-60 236.9 193 69.4
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.6e-55 220.7 188 72.3
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.1e-53 214.5 203 69.0
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 5.3e-51 205.7 309 44.3
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 4.5e-50 202.6 301 45.2
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.0e-49 201.4 226 58.0
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.8e-49 199.5 163 79.8
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.1e-43 179.9 192 59.9
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 3.1e-43 179.9 191 58.1
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 3.8e-41 172.9 193 49.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 4.2e-40 169.5 111 78.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.0e-37 160.6 104 73.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-33 147.1 163 51.5
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.7e-31 140.2 102 67.6
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.0e-30 138.3 262 49.2
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 3.0e-22 110.2 77 71.4
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.2e-21 108.2 86 66.3
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 2.6e-21 107.1 299 37.1
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 2.6e-21 107.1 61 78.7
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 4.4e-21 106.3 299 36.8
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.4e-19 101.3 151 48.3
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 2.7e-18 97.1 63 71.4
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 2.3e-17 94.0 121 62.8
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 9.5e-16 88.6 113 58.4
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 2.6e-13 80.5 57 64.9
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 6.4e-12 75.9 51 82.4
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 8.3e-12 75.5 117 50.4
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 2.5e-08 63.9 126 42.1


User provided reference genes

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