Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 5.1e-139 497.7 241 100.0
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.3e-110 402.5 237 78.5
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 5.0e-110 401.4 233 82.4
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.5e-109 399.8 238 78.6
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 5.6e-109 397.9 237 78.1
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 2.3e-107 392.5 238 76.9
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 3.4e-106 388.7 211 88.2
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.2e-105 386.0 238 78.6
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 2.9e-105 385.6 238 76.5
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 5.4e-104 381.3 238 73.9
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 3.0e-102 375.6 239 74.5
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 5.0e-102 374.8 238 73.1
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.9e-101 372.9 293 64.2
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 3.3e-101 372.1 238 73.9
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 3.3e-101 372.1 237 75.9
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 1.2e-100 370.2 237 72.2
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 8.9e-99 364.0 234 73.1
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 8.9e-99 364.0 214 79.9
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 2.6e-98 362.5 237 73.8
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.2e-97 359.4 236 70.8
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 2.2e-97 359.4 236 70.8
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 2.9e-97 359.0 237 73.8
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 6.4e-97 357.8 238 73.1
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.9e-96 356.3 237 70.9
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 3.2e-96 355.5 236 71.6
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 5.4e-96 354.8 237 72.2
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 7.0e-96 354.4 237 70.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 9.2e-96 354.0 236 70.8
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 9.2e-96 354.0 240 68.3
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.2e-95 353.6 237 71.7
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.6e-95 353.2 237 70.0
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.6e-95 353.2 237 73.8
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 2.0e-95 352.8 238 70.6
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 2.0e-95 352.8 239 70.3
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.7e-95 352.4 237 72.2
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.7e-94 349.7 236 69.5
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 2.3e-94 349.4 236 70.3
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 5.0e-94 348.2 236 69.1
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 6.6e-94 347.8 236 69.1
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 1.1e-93 347.1 236 66.9
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.1e-93 347.1 238 70.2
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.1e-93 347.1 237 68.8
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.1e-93 347.1 237 71.7
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.5e-93 346.7 236 68.6
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 1.9e-93 346.3 236 68.6
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.9e-93 346.3 236 68.6
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.9e-93 346.3 236 68.6
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 2.5e-93 345.9 236 69.1
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 2.5e-93 345.9 237 70.9
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 5.6e-93 344.7 236 68.2
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 5.6e-93 344.7 236 66.9
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 5.6e-93 344.7 237 71.7
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 9.5e-93 344.0 236 68.2
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 9.5e-93 344.0 238 70.2
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 1.2e-92 343.6 236 68.6
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.6e-92 343.2 242 69.0
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 2.1e-92 342.8 236 68.6
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.8e-92 342.4 236 69.1
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 4.7e-92 341.7 237 68.4
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 4.7e-92 341.7 237 68.4
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 6.2e-92 341.3 237 70.0
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 6.2e-92 341.3 240 65.4
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-91 340.5 237 67.9
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.1e-91 340.5 237 67.9
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.4e-91 340.1 236 68.6
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 2.3e-91 339.3 240 65.0
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.0e-91 338.6 240 64.6
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 6.8e-91 337.8 237 69.6
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 8.9e-91 337.4 237 67.5
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 8.9e-91 337.4 240 64.2
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.2e-90 337.0 236 69.1
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 1.2e-90 337.0 237 68.8
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.5e-90 336.7 237 67.9
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.5e-90 336.7 239 66.1
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 2.2e-89 332.8 235 66.0
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.1e-88 330.5 237 68.8
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 2.4e-88 329.3 240 65.0
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 2.4e-88 329.3 237 65.8
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 4.1e-88 328.6 238 63.4
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 7.1e-88 327.8 240 65.0
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 9.2e-88 327.4 286 59.1
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.6e-87 325.1 240 64.6
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 7.8e-87 324.3 237 66.7
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.8e-87 324.3 237 66.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 1.3e-86 323.6 237 64.6
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.3e-86 323.6 237 66.7
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 2.3e-86 322.8 239 63.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 6.6e-86 321.2 294 55.4
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 2.5e-85 319.3 236 65.3
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 9.5e-85 317.4 237 64.1
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.6e-84 316.6 233 65.2
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 2.1e-84 316.2 261 59.0
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.1e-84 316.2 237 65.4
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 4.7e-84 315.1 237 64.1
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 8.1e-84 314.3 232 64.2
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 8.1e-84 314.3 232 64.2
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.8e-83 313.2 235 61.3
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 4.0e-83 312.0 219 69.9
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 5.2e-83 311.6 237 62.9
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.0e-82 309.7 233 62.7
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 5.8e-82 308.1 234 60.3
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.7e-81 306.6 228 63.6
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 4.9e-81 305.1 235 62.1
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 6.4e-81 304.7 240 60.8
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.9e-80 303.1 194 77.3
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-79 300.4 238 62.2
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 3.6e-76 288.9 236 61.9
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.6e-76 288.9 211 66.8
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 4.2e-72 275.4 235 60.4
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.7e-62 243.4 213 54.5
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.6e-60 236.9 213 57.3
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 6.9e-59 231.5 238 52.1
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 6.9e-59 231.5 238 52.1
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 2.9e-57 226.1 240 51.2
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 5.5e-56 221.9 293 41.6
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 7.9e-55 218.0 243 50.2
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 3.7e-52 209.1 207 54.1
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.4e-51 207.2 241 44.8
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 2.9e-49 199.5 136 69.9
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 5.5e-48 195.3 236 42.4
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 2.7e-47 193.0 233 45.5
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 3.7e-44 182.6 106 77.4
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 4.8e-44 182.2 166 59.0
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 4.5e-42 175.6 242 43.4
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 3.2e-40 169.5 224 46.0
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 7.9e-39 164.9 195 40.5
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.9e-37 160.2 130 62.3
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 4.8e-36 155.6 154 54.5
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 4.8e-36 155.6 107 72.0
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 6.3e-36 155.2 205 43.9
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 2.6e-34 149.8 109 62.4
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 2.9e-33 146.4 178 43.3
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 7.9e-23 111.7 236 32.2
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.3e-20 104.4 82 58.5
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.2e-18 97.8 59 69.5
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 6.5e-17 92.0 198 30.3
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 5.7e-13 79.0 189 29.1
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 2.9e-09 66.6 45 60.0


User provided reference genes

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