Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 9.5e-59 229.9 114 100.0
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 1.0e-52 209.9 114 91.2
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 4.3e-51 204.5 114 86.0
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 5.6e-51 204.1 114 87.7
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 5.6e-51 204.1 114 87.7
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 9.5e-51 203.4 114 85.1
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.2e-50 203.0 114 86.0
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 2.8e-50 201.8 114 85.1
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 1.0e-49 199.9 114 84.2
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.8e-49 199.1 114 85.1
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 4.0e-49 198.0 114 83.3
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 6.8e-49 197.2 114 83.3
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 6.8e-49 197.2 114 82.5
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 8.9e-49 196.8 114 83.3
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 8.9e-49 196.8 114 81.6
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.2e-48 196.4 114 82.5
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 1.5e-48 196.1 114 82.5
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.0e-48 195.7 145 71.7
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 2.0e-48 195.7 114 84.2
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 2.0e-48 195.7 114 84.2
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 2.0e-48 195.7 114 84.2
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 2.6e-48 195.3 114 84.2
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 3.4e-48 194.9 114 79.8
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 4.4e-48 194.5 114 81.6
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 4.4e-48 194.5 114 79.8
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 4.4e-48 194.5 113 83.2
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 5.8e-48 194.1 114 80.7
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 5.8e-48 194.1 114 79.8
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 5.8e-48 194.1 114 81.6
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 5.8e-48 194.1 114 81.6
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 5.8e-48 194.1 114 81.6
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 1.3e-47 193.0 114 82.5
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 1.3e-47 193.0 114 82.5
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.7e-47 192.6 114 80.7
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.9e-47 191.8 114 80.7
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 2.9e-47 191.8 114 81.6
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 3.7e-47 191.4 114 81.6
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 3.7e-47 191.4 114 79.8
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 3.7e-47 191.4 114 78.9
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 4.9e-47 191.0 114 78.9
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 4.9e-47 191.0 114 79.8
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 8.3e-47 190.3 114 81.6
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.4e-46 189.5 114 78.9
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 1.4e-46 189.5 114 78.9
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.9e-46 189.1 114 78.1
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 2.4e-46 188.7 114 80.7
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.4e-46 188.7 114 80.7
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 3.2e-46 188.3 114 76.3
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 4.1e-46 188.0 114 78.1
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 4.1e-46 188.0 114 78.1
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 4.1e-46 188.0 114 78.1
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 4.1e-46 188.0 114 78.1
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 5.4e-46 187.6 114 78.9
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 5.4e-46 187.6 114 77.2
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 7.0e-46 187.2 114 77.2
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 7.0e-46 187.2 114 76.3
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 9.2e-46 186.8 114 80.7
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 9.2e-46 186.8 114 78.9
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.2e-45 186.4 114 76.3
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.2e-45 186.4 114 78.9
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.2e-45 186.4 114 78.1
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.0e-45 185.7 114 78.9
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 2.0e-45 185.7 114 79.8
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 2.0e-45 185.7 114 80.7
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 4.6e-45 184.5 114 76.3
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 6.0e-45 184.1 114 78.1
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 1.0e-44 183.3 114 76.3
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.0e-44 183.3 114 77.2
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.0e-44 183.3 114 80.7
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.3e-44 183.0 114 78.9
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 1.3e-44 183.0 114 77.2
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 3.0e-44 181.8 114 73.7
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 3.0e-44 181.8 114 76.3
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.9e-43 179.1 112 73.2
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 1.2e-42 176.4 114 75.4
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.2e-42 176.4 107 75.7
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.6e-42 176.0 114 75.4
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.6e-42 176.0 114 75.4
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 1.6e-42 176.0 107 77.6
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.6e-42 176.0 114 74.6
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 1.6e-42 176.0 114 75.4
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 2.8e-42 175.3 114 75.4
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.8e-42 175.3 114 73.7
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 2.8e-42 175.3 114 73.7
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.6e-42 174.9 114 75.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 4.7e-42 174.5 114 74.6
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 6.2e-42 174.1 114 75.4
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 6.2e-42 174.1 114 75.4
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 6.2e-42 174.1 114 75.4
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.4e-41 172.9 114 73.7
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 1.8e-41 172.6 114 74.6
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 5.2e-41 171.0 203 49.8
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 5.2e-41 171.0 114 72.8
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 6.8e-41 170.6 115 73.9
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 8.9e-41 170.2 114 73.7
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 2.6e-40 168.7 114 74.6
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.3e-39 166.4 114 69.3
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.7e-39 166.0 114 69.3
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 1.7e-39 166.0 115 68.7
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 3.7e-39 164.9 155 56.8
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.4e-38 162.2 114 71.9
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 3.2e-38 161.8 115 64.3
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 2.7e-37 158.7 115 60.0
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 3.5e-37 158.3 130 62.3
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 5.1e-36 154.5 200 48.0
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 8.6e-36 153.7 114 64.9
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.4e-33 146.4 95 75.8
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.2e-32 143.3 81 85.2
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 1.2e-32 143.3 114 63.2
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 1.5e-32 142.9 92 70.7
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 4.4e-32 141.4 217 40.6
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 2.2e-31 139.0 82 81.7
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 8.4e-31 137.1 81 82.7
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.1e-30 136.7 80 82.5
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 1.5e-24 116.3 114 51.8
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.9e-19 99.4 74 70.3
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 1.8e-17 92.8 95 50.5
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 3.4e-16 88.6 114 38.6
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.1e-13 79.3 83 55.4
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.1e-13 79.3 83 55.4
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.0e-12 77.0 40 90.0
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.3e-12 76.6 40 90.0
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.3e-12 76.6 40 87.5
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 6.7e-12 74.3 41 82.9
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.9e-11 72.8 43 79.1
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 4.3e-11 71.6 71 54.9
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.1e-09 67.0 93 44.1
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 3.1e-09 65.5 106 34.0


User provided reference genes

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