Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 2.6e-62 241.9 124 100.0
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 8.8e-34 147.1 75 96.0
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 3.2e-28 128.6 68 91.2
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 4.7e-27 124.8 74 83.8
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.4e-26 123.2 74 78.4
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.4e-26 123.2 74 78.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 3.0e-26 122.1 74 78.4
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 8.8e-26 120.6 74 77.0
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 8.8e-26 120.6 74 77.0
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.1e-25 120.2 81 70.4
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.1e-25 120.2 78 70.5
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.5e-25 119.8 75 74.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 7.5e-25 117.5 74 75.7
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 9.7e-25 117.1 77 74.0
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 9.7e-25 117.1 81 69.1
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 9.7e-25 117.1 75 72.0
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.3e-24 116.7 73 75.3
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.7e-24 116.3 75 74.7
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 4.8e-24 114.8 75 72.0
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 6.3e-24 114.4 82 64.6
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 6.3e-24 114.4 72 75.0
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.1e-23 113.6 75 72.0
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.8e-23 112.8 75 73.3
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.8e-23 112.8 85 64.7
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 3.1e-23 112.1 75 70.7
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.0e-23 110.9 74 73.0
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 9.1e-23 110.5 75 68.0
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 9.1e-23 110.5 75 69.3
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 9.1e-23 110.5 74 71.6
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 9.1e-23 110.5 75 69.3
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.2e-22 110.2 75 70.7
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.2e-22 110.2 74 70.3
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.6e-22 109.8 75 72.0
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.6e-22 109.8 75 72.0
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.6e-22 109.8 82 64.6
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.0e-22 109.4 73 69.9
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.0e-22 109.4 72 69.4
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.0e-22 109.4 72 69.4
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 2.0e-22 109.4 75 70.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 2.7e-22 109.0 75 68.0
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.7e-22 109.0 75 70.7
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 4.5e-22 108.2 75 68.0
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 4.5e-22 108.2 75 68.0
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 4.5e-22 108.2 75 68.0
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 5.9e-22 107.8 75 68.0
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 5.9e-22 107.8 75 68.0
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 5.9e-22 107.8 72 72.2
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 7.7e-22 107.5 72 70.8
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.0e-21 107.1 75 66.7
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.0e-21 107.1 75 65.3
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.3e-21 106.7 75 69.3
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.3e-21 106.7 69 73.9
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.7e-21 106.3 75 65.3
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.7e-21 106.3 74 68.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 2.2e-21 105.9 75 65.3
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.2e-21 105.9 75 65.3
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 2.2e-21 105.9 69 72.5
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 3.8e-21 105.1 75 68.0
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 3.8e-21 105.1 75 68.0
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 6.5e-21 104.4 75 69.3
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 8.5e-21 104.0 75 69.3
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.1e-20 103.6 74 67.6
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 2.5e-20 102.4 98 57.1
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 2.5e-20 102.4 98 57.1
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.5e-20 102.4 75 69.3
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.2e-20 102.1 66 75.8
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 3.2e-20 102.1 75 66.7
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 5.5e-20 101.3 75 65.3
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 5.5e-20 101.3 75 65.3
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 9.4e-20 100.5 82 62.2
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 9.4e-20 100.5 83 60.2
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 9.4e-20 100.5 75 61.3
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 9.4e-20 100.5 75 64.0
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.2e-19 100.1 75 65.3
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.6e-19 99.8 75 62.7
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.6e-19 99.8 75 62.7
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.6e-19 99.8 76 60.5
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 2.1e-19 99.4 80 60.0
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 2.1e-19 99.4 75 64.0
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.7e-19 99.0 74 68.9
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.7e-19 99.0 75 62.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.6e-19 98.6 75 65.3
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 4.7e-19 98.2 74 68.9
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 4.7e-19 98.2 75 61.3
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 4.7e-19 98.2 85 57.6
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 4.7e-19 98.2 85 57.6
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 4.7e-19 98.2 75 65.3
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.1e-19 97.8 75 61.3
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 8.0e-19 97.4 75 64.0
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.0e-18 97.1 77 62.3
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.0e-18 97.1 75 62.7
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.4e-18 96.7 75 62.7
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-18 96.7 75 62.7
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.4e-18 96.7 75 62.7
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.4e-18 96.7 75 62.7
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.4e-18 96.7 75 62.7
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.8e-18 96.3 75 64.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-18 95.5 81 58.0
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 4.0e-18 95.1 89 56.2
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.2e-17 93.6 75 60.0
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.2e-17 93.6 75 60.0
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.2e-17 93.6 75 60.0
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 2.0e-17 92.8 78 60.3
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.6e-17 92.4 75 58.7
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 2.6e-17 92.4 75 60.0
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 3.4e-17 92.0 88 51.1
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 3.4e-17 92.0 95 49.5
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 3.4e-17 92.0 75 60.0
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 9.8e-17 90.5 63 69.8
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 9.8e-17 90.5 78 55.1
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 9.8e-17 90.5 75 60.0
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.2e-16 89.4 71 60.6
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.8e-16 89.0 81 59.3
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.7e-16 88.6 72 58.3
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 8.3e-16 87.4 75 58.7
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 8.3e-16 87.4 75 56.0
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.1e-15 87.0 75 56.0
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.4e-15 86.7 72 59.7
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.4e-15 86.7 72 59.7
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.4e-15 86.7 72 59.7
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.4e-15 86.7 72 59.7
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 4.1e-15 85.1 75 54.7
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 5.4e-15 84.7 75 58.7
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-14 83.6 68 57.4
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.0e-14 82.8 52 78.8
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 3.5e-14 82.0 73 58.9
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 3.5e-14 82.0 73 56.2
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 3.5e-14 82.0 75 52.0
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 7.7e-14 80.9 79 54.4
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.0e-13 80.5 75 49.3
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.0e-13 80.5 75 49.3
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 3.8e-13 78.6 73 56.2
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 2.5e-12 75.9 75 45.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.5e-12 75.9 75 45.3
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 3.2e-12 75.5 75 48.0
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 3.2e-12 75.5 82 45.1
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 2.7e-11 72.4 87 48.3
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.0e-10 68.6 45 71.1
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 5.2e-10 68.2 72 45.8
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.2e-09 67.0 77 48.1
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 2.0e-09 66.2 60 58.3
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.3e-08 63.5 73 43.8
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.7e-08 63.2 72 45.8
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.8e-08 62.4 44 70.5
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.4e-07 59.3 40 75.0
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 9.2e-07 57.4 47 53.2
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.6e-06 56.6 73 41.1
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 2.0e-06 56.2 47 57.4
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 5.9e-06 54.7 40 65.0


User provided reference genes

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