Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07357 Davidia involucrata HOM05D000929 ORTHO05D004137 6.9e-70 267.7 192 100.0
CANSAT64G1824 Cannabis sativa HOM05D000929 ORTHO05D004137 1.4e-17 94.0 52 84.6
EL10Ac9g21056 Beta vulgaris HOM05D000929 ORTHO05D004137 1.8e-17 93.6 54 83.3
Cfa010100 Carpinus fangiana HOM05D000929 ORTHO05D004137 1.8e-17 93.6 54 83.3
Dinv09632 Davidia involucrata HOM05D000929 ORTHO05D004137 1.8e-17 93.6 45 95.6
MBI17_g45825_MAGBIO Magnolia biondii HOM05D000929 ORTHO05D004137 1.8e-17 93.6 55 80.0
Manes.11G155700 Manihot esculenta HOM05D000929 ORTHO05D004137 1.8e-17 93.6 54 83.3
Prupe.6G117500 Prunus persica HOM05D000929 ORTHO05D004137 1.8e-17 93.6 54 83.3
QL01p014018 Quercus lobata HOM05D000929 ORTHO05D004137 1.8e-17 93.6 54 83.3
Sabra09G0119000 Salix brachista HOM05D000929 ORTHO05D004137 1.8e-17 93.6 57 78.9
Thecc.09G293300 Theobroma cacao HOM05D000929 ORTHO05D004137 1.8e-17 93.6 54 83.3
Atru.chr3.3402 Acer truncatum HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
CAN.G919.3 Capsicum annuum HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
CiPaw.14G104400 Carya illinoinensis HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 81.5
Ciclev10027737m.g Citrus clementina HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 81.5
MELO3C021463.2 Cucumis melo HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
CsaV3_6G014610 Cucumis sativus L. HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Duzib150G0964 Durio zibethinus HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Duzib168G0512 Durio zibethinus HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Duzib170G1132 Durio zibethinus HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Lsat_1_v5_gn_6_42741 Lactuca sativa HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 81.5
MD03G1132700 Malus domestica HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
MD11G1155000 Malus domestica HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Nitab4.5_0003470g0070 Nicotiana tabacum HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
RcHm_v2.0_Chr5g0055751 Rosa chinensis HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Sed0000238 Sechium edule HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Sed0008575 Sechium edule HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Solyc06g074650.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Sopen06g031070 Solanum pennellii HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
TWI79G0614 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
GSVIVG01031413001 Vitis vinifera HOM05D000929 ORTHO05D004137 2.3e-17 93.2 54 83.3
Actinidia07205 Actinidia chinensis HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Actinidia24174 Actinidia chinensis HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
ATR0820G043 Amborella trichopoda HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Aqoxy2G01493 Aquilegia oxysepala HOM05D000929 ORTHO05D004137 3.0e-17 92.8 46 91.3
ClCG02G021820 Citrullus lanatus HOM05D000929 ORTHO05D004137 3.0e-17 92.8 53 84.9
Cc01_g09940 Coffea canephora HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
COL.COLO4_19274 Corchorus olitorius HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
DCAR_015485 Daucus carota HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Dinv29411 Davidia involucrata HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
ECA233G5521 Erigeron canadensis HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Migut.D02325 Erythranthe guttata HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
FvH4_3g30090 Fragaria vesca HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 83.3
FAN11G0593 Fragaria x ananassa HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 83.3
FAN16G3173 Fragaria x ananassa HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 83.3
FAN21G3154 Fragaria x ananassa HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 83.3
FAN25G1715 Fragaria x ananassa HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 83.3
Gohir.A09G092000 Gossypium hirsutum HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 83.3
Gohir.D09G091900 Gossypium hirsutum HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 83.3
Gorai.006G108500 Gossypium raimondii HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 83.3
HanXRQChr13g0396891 Helianthus annuus HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Lj1A219G36 Lonicera japonica HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Lj2C996G14 Lonicera japonica HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Nitab4.5_0002571g0040 Nicotiana tabacum HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Nitab4.5_0004926g0020 Nicotiana tabacum HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Potri.009G150300 Populus trichocarpa HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
PGR119G0792 Punica granatum HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Rhsim13G0104500 Rhododendron simsii HOM05D000929 ORTHO05D004137 3.0e-17 92.8 58 75.9
Hund00800 Selenicereus undatus HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
TAR633G0080 Trochodendron aralioides HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
vmacro03226 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
vmacro23023 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 3.0e-17 92.8 54 81.5
Gohir.A08G003300 Gossypium hirsutum HOM05D000929 ORTHO05D004137 4.0e-17 92.4 48 87.5
Gohir.D08G013700 Gossypium hirsutum HOM05D000929 ORTHO05D004137 4.0e-17 92.4 48 87.5
Gorai.004G008000 Gossypium raimondii HOM05D000929 ORTHO05D004137 4.0e-17 92.4 48 87.5
Peaxi162Scf00157g00039 Petunia axillaris HOM05D000929 ORTHO05D004137 4.0e-17 92.4 46 91.3
Rhsim01G0209300 Rhododendron simsii HOM05D000929 ORTHO05D004137 4.0e-17 92.4 46 91.3
SalBow6G6633 Salvia bowleyana HOM05D000929 ORTHO05D004137 4.0e-17 92.4 45 93.3
TAR636G3579 Trochodendron aralioides HOM05D000929 ORTHO05D004137 4.0e-17 92.4 54 79.6
unitig_27.g25115 Utricularia gibba HOM05D000929 ORTHO05D004137 4.0e-17 92.4 56 78.6
PSO339G3653 Papaver somniferum HOM05D000929 ORTHO05D004137 5.2e-17 92.0 54 79.6
PSO384G2211 Papaver somniferum HOM05D000929 ORTHO05D004137 5.2e-17 92.0 54 79.6
vmacro14382 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 5.2e-17 92.0 45 93.3
Os03g0112101 Oryza sativa ssp. japonica HOM05D000929 ORTHO05D004137 6.8e-17 91.7 54 79.6
Sc21g0004640 Simmondsia chinensis HOM05D000929 ORTHO05D004137 6.8e-17 91.7 54 81.5
Zm00001eb000860 Zea mays HOM05D000929 ORTHO05D004137 6.8e-17 91.7 54 79.6
arahy.Tifrunner.gnm1.ann1.JFAW9R Arachis hypogaea HOM05D000929 ORTHO05D004137 8.9e-17 91.3 54 79.6
arahy.Tifrunner.gnm1.ann1.SC897I Arachis hypogaea HOM05D000929 ORTHO05D004137 8.9e-17 91.3 54 79.6
CSS0004620 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 8.9e-17 91.3 46 89.1
HanXRQChr14g0451931 Helianthus annuus HOM05D000929 ORTHO05D004137 8.9e-17 91.3 54 79.6
Hma1.2p1_0051F.1_g029810 Hydrangea macrophylla HOM05D000929 ORTHO05D004137 8.9e-17 91.3 54 79.6
SHI06142 Sapria himalayana HOM05D000929 ORTHO05D004137 8.9e-17 91.3 54 79.6
SEGI_17793 Sequoiadendron giganteum HOM05D000929 ORTHO05D004137 8.9e-17 91.3 54 79.6
HPP92_028038 Vanilla planifolia HOM05D000929 ORTHO05D004137 8.9e-17 91.3 54 79.6
CAN.G644.41 Capsicum annuum HOM05D000929 ORTHO05D004137 1.2e-16 90.9 54 79.6
Peaxi162Scf00789g00218 Petunia axillaris HOM05D000929 ORTHO05D004137 1.2e-16 90.9 46 89.1
Solyc11g066770.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 1.2e-16 90.9 54 79.6
Sopen11g026490 Solanum pennellii HOM05D000929 ORTHO05D004137 1.2e-16 90.9 54 79.6
arahy.Tifrunner.gnm1.ann1.F9AZ7P Arachis hypogaea HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
arahy.Tifrunner.gnm1.ann1.MS8XLG Arachis hypogaea HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
Ca_01687_v3 Cicer arietinum L. HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
Glyma.12G180600 Glycine max HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
Glyma.13G320200 Glycine max HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
Lj3g0021930 Lotus japonicus HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
Lalb_Chr22g0350571 Lupinus albus HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
Medtr2g084610 Medicago truncatula HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
Phvul.005G128200 Phaseolus vulgaris HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
Psat5g254120 Pisum sativum HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
TPR.G32382 Trifolium pratense HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
TWI31G0368 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 77.8
VMungo1080G1504 Vigna mungo HOM05D000929 ORTHO05D004137 1.5e-16 90.5 54 79.6
Ah.01g016700 Amaranthus hybridus HOM05D000929 ORTHO05D004137 2.0e-16 90.1 56 78.6
Lsat_1_v5_gn_2_96621 Lactuca sativa HOM05D000929 ORTHO05D004137 2.0e-16 90.1 54 77.8
Actinidia03683 Actinidia chinensis HOM05D000929 ORTHO05D004137 2.6e-16 89.7 54 81.5
CDE02G4539 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 2.6e-16 89.7 54 77.8
CDE04G0670 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 2.6e-16 89.7 54 77.8
AUR62023959 Chenopodium quinoa HOM05D000929 ORTHO05D004137 2.6e-16 89.7 54 79.6
AUR62031755 Chenopodium quinoa HOM05D000929 ORTHO05D004137 2.6e-16 89.7 54 79.6
Eucgr.J00415 Eucalyptus grandis HOM05D000929 ORTHO05D004137 2.6e-16 89.7 54 79.6
Manes.04G010400 Manihot esculenta HOM05D000929 ORTHO05D004137 2.6e-16 89.7 54 79.6
BcaC09g49654 Brassica carinata HOM05D000929 ORTHO05D004137 4.4e-16 89.0 46 87.0
A01p26810 Brassica napus HOM05D000929 ORTHO05D004137 4.4e-16 89.0 46 87.0
C01p34170 Brassica napus HOM05D000929 ORTHO05D004137 4.4e-16 89.0 46 87.0
BolC1t03387H Brassica oleracea HOM05D000929 ORTHO05D004137 4.4e-16 89.0 46 87.0
BraA01t02610Z Brassica rapa HOM05D000929 ORTHO05D004137 4.4e-16 89.0 46 87.0
SMO353G0315 Selaginella moellendorffii HOM05D000929 ORTHO05D004137 4.4e-16 89.0 54 79.6
Lalb_Chr24g0395091 Lupinus albus HOM05D000929 ORTHO05D004137 5.7e-16 88.6 54 75.9
Nitab4.5_0000442g0230 Nicotiana tabacum HOM05D000929 ORTHO05D004137 5.7e-16 88.6 44 90.9
Dinv12535 Davidia involucrata HOM05D000929 ORTHO05D004137 7.5e-16 88.2 54 79.6
CSS0041991 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 9.8e-16 87.8 54 77.8
Nn2g13966 Nelumbo nucifera HOM05D000929 ORTHO05D004137 9.8e-16 87.8 46 87.0
Aa31LG1G12920 Aethionema arabicum HOM05D000929 ORTHO05D004137 1.3e-15 87.4 44 90.9
Potri.004G189700 Populus trichocarpa HOM05D000929 ORTHO05D004137 1.3e-15 87.4 54 77.8
Sabra04G0128300 Salix brachista HOM05D000929 ORTHO05D004137 1.3e-15 87.4 54 77.8
Lalb_Chr14g0374291 Lupinus albus HOM05D000929 ORTHO05D004137 1.7e-15 87.0 46 84.8
Mapoly0072s0011 Marchantia polymorpha HOM05D000929 ORTHO05D004137 1.7e-15 87.0 54 75.9
Oeu010644.1 Olea europaea HOM05D000929 ORTHO05D004137 2.2e-15 86.7 54 75.9
Pp3c17_2250 Physcomitrium patens HOM05D000929 ORTHO05D004137 2.8e-15 86.3 54 75.9
Aa31LG4G14280 Aethionema arabicum HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
AL6G33770 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
AL6G33800 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
AT5G22770 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
AT5G22780 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
A10p18250 Brassica napus HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
C09p53880 Brassica napus HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
BolC9t58261H Brassica oleracea HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
BraA10t43900Z Brassica rapa HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
Carub.0006s2048 Capsella rubella HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
Carub.0006s2049 Capsella rubella HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
CARHR190820 Cardamine hirsuta HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
Thhalv10012556m.g Eutrema salsugineum HOM05D000929 ORTHO05D004137 3.7e-15 85.9 44 88.6
AagrBONN_evm.TU.Sc2ySwM_344.3846 Anthoceros agrestis HOM05D000929 ORTHO05D004137 8.3e-15 84.7 54 74.1
THA.LOC104810893 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 8.3e-15 84.7 44 86.4
THA.LOC104814807 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 1.1e-14 84.3 44 86.4
Pp3c17_6470 Physcomitrium patens HOM05D000929 ORTHO05D004137 1.8e-14 83.6 54 74.1
THA.LOC104799529 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 1.8e-14 83.6 44 84.1
CARHR151250 Cardamine hirsuta HOM05D000929 ORTHO05D004137 3.1e-14 82.8 46 80.4
CBR_g29503 Chara braunii HOM05D000929 ORTHO05D004137 4.1e-14 82.4 54 68.5
Pp3c1_29560 Physcomitrium patens HOM05D000929 ORTHO05D004137 9.2e-14 81.3 54 70.4
COL.COLO4_18716 Corchorus olitorius HOM05D000929 ORTHO05D004137 4.5e-13 79.0 54 70.4
PRCOL_00005986 Prasinoderma coloniale HOM05D000929 ORTHO05D004137 1.0e-12 77.8 54 68.5
Psat5g219760 Pisum sativum HOM05D000929 ORTHO05D004137 3.8e-12 75.9 38 92.1
Cfa026228 Carpinus fangiana HOM05D000929 ORTHO05D004137 1.9e-11 73.6 53 62.3
Haze_23466 Corylus avellana HOM05D000929 ORTHO05D004137 1.9e-11 73.6 41 82.9
MCO16G250 Micromonas commoda HOM05D000929 ORTHO05D004137 2.1e-10 70.1 53 58.5
SMO203G0076 Selaginella moellendorffii HOM05D000929 ORTHO05D004137 1.0e-09 67.8 46 60.9
Haze_26830 Corylus avellana HOM05D000929 ORTHO05D004137 1.4e-09 67.4 54 55.6
Psat3g146040 Pisum sativum HOM05D000221 ORTHO05D004137 4.0e-09 65.9 33 90.9
Cre12.g488850 Chlamydomonas reinhardtii HOM05D000929 ORTHO05D004137 5.2e-09 65.5 84 38.1
SGA_v2.0_scaffold27G11598 Striga asiatica HOM05D000929 ORTHO05D004137 8.9e-09 64.7 32 93.8
CiPaw.13G142000 Carya illinoinensis HOM05D000929 ORTHO05D004137 2.6e-08 63.2 32 90.6
ECA238G1224 Erigeron canadensis HOM05D000929 ORTHO05D004137 2.6e-08 63.2 32 90.6
Hma1.2p1_0140F.1_g063590 Hydrangea macrophylla HOM05D000929 ORTHO05D004137 7.5e-08 61.6 34 82.4
SGA_v2.0_scaffold193G40716 Striga asiatica HOM05D000929 ORTHO05D004137 9.8e-08 61.2 32 90.6
Psat0s2277g0040 Pisum sativum HOM05D000929 ORTHO05D004137 1.7e-07 60.5 31 90.3
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 2.2e-07 60.1 55 89.1
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 2.2e-07 60.1 55 89.1
Hma1.2p1_1655F.1_g295990 Hydrangea macrophylla HOM05D000929 ORTHO05D004137 4.9e-07 58.9 32 84.4


User provided reference genes

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