Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1900.9 971 100.0
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1129.8 981 66.5
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 3.2e-224 782.7 1035 48.3
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 6.2e-167 592.4 687 52.0
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.2e-163 579.7 940 43.5
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 1.2e-146 525.0 1052 39.0
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.4e-142 511.5 967 40.7
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 6.4e-140 502.7 1058 38.2
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 7.4e-136 489.2 1027 36.7
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 1.8e-121 441.4 1266 33.1
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.9e-115 421.4 1039 34.7
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 2.2e-103 381.3 1177 32.1
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 3.1e-102 377.5 999 35.4
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 7.5e-72 276.6 887 32.2
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 3.2e-70 271.2 853 30.6
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 3.0e-68 264.6 967 29.5
MD16G1035300 Malus domestica HOM05D001849 ORTHO05D004075 8.6e-68 263.1 563 36.4
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 4.6e-61 240.7 514 37.9
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 6.6e-60 236.9 305 45.9
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 1.4e-57 229.2 929 27.7
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 4.0e-57 227.6 865 27.9
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 5.2e-57 227.3 856 28.4
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.2e-56 226.1 865 28.2
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 4.4e-56 224.2 1105 27.5
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 7.6e-56 223.4 904 29.8
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 9.9e-56 223.0 865 27.5
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.3e-55 222.6 953 26.9
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.7e-55 222.2 877 29.2
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.7e-55 222.2 911 28.9
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 1.7e-55 222.2 869 28.5
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 2.9e-55 221.5 930 28.2
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.9e-55 220.7 908 28.2
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 4.9e-55 220.7 924 27.3
Lj6P751T18 Lonicera japonica HOM05D001849 ORTHO05D004075 1.1e-54 219.5 421 40.1
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 1.1e-54 219.5 928 28.7
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 1.4e-54 219.2 913 29.1
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.9e-54 218.8 852 27.5
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.2e-54 218.0 849 27.4
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.1e-54 217.6 936 27.9
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 1.2e-53 216.1 794 27.8
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 2.1e-53 215.3 930 28.3
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 1.3e-52 212.6 854 28.2
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 3.0e-52 211.5 858 28.1
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 3.0e-52 211.5 857 27.1
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.1e-51 209.5 858 28.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 1.5e-51 209.1 868 28.1
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.9e-51 208.8 880 28.2
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 5.6e-51 207.2 915 28.0
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 5.6e-51 207.2 865 27.9
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 7.3e-51 206.8 798 28.8
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 2.1e-50 205.3 883 27.7
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 2.1e-50 205.3 864 28.8
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.1e-50 205.3 790 28.4
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 1.8e-49 202.2 877 27.7
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 1.8e-49 202.2 849 27.2
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 3.1e-49 201.4 1040 26.6
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 5.2e-49 200.7 859 27.2
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 8.9e-49 199.9 919 28.2
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 1.5e-48 199.1 908 28.5
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 2.0e-48 198.7 822 28.1
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 2.6e-48 198.4 882 27.3
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 3.4e-48 198.0 905 27.7
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 4.4e-48 197.6 870 27.9
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 4.4e-48 197.6 1006 26.9
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 5.8e-48 197.2 871 27.0
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 7.6e-48 196.8 1139 27.7
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 1.3e-47 196.1 1059 25.5
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 1.7e-47 195.7 851 27.7
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 1.7e-47 195.7 899 27.5
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 1.7e-47 195.7 916 27.2
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 1.7e-47 195.7 894 27.6
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 2.2e-47 195.3 865 27.6
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 2.9e-47 194.9 848 27.8
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 4.9e-47 194.1 1033 26.5
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 6.4e-47 193.7 866 27.5
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 8.4e-47 193.4 861 28.0
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.1e-46 193.0 1049 25.1
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 1.9e-46 192.2 1082 26.6
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.9e-46 192.2 947 26.6
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 5.4e-46 190.7 1077 27.0
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 7.1e-46 190.3 868 27.2
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 1.6e-45 189.1 1088 26.2
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 2.1e-45 188.7 875 27.9
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.7e-45 188.3 1117 26.0
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 4.6e-45 187.6 1054 26.1
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 1.7e-44 185.7 857 28.1
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.7e-44 185.7 1093 25.6
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 3.0e-44 184.9 867 27.0
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 6.6e-44 183.7 1065 25.7
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 6.6e-44 183.7 1065 25.2
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.5e-43 182.6 861 27.8
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 4.3e-43 181.0 748 28.1
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 5.6e-43 180.6 786 29.0
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.3e-42 179.5 664 28.6
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 1.6e-42 179.1 1065 25.4
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 2.1e-42 178.7 854 28.1
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 2.1e-42 178.7 852 27.7
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 2.8e-42 178.3 951 26.8
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.8e-42 177.6 832 26.7
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 4.8e-42 177.6 888 27.5
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 1.8e-41 175.6 1018 27.0
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 1.8e-41 175.6 1018 27.0
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 1.8e-41 175.6 795 26.5
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 9.0e-41 173.3 860 26.4
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 1.5e-40 172.6 1012 26.6
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.3e-39 169.5 886 27.3
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 4.9e-39 167.5 912 25.7
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 6.4e-39 167.2 1062 25.2
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 8.4e-39 166.8 1043 26.4
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.1e-38 166.4 1043 26.3
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.1e-38 166.4 914 26.6
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.2e-38 164.5 671 27.9
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.2e-37 162.9 787 26.0
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 2.7e-37 161.8 846 25.5
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.3e-36 159.5 1106 25.9
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 1.3e-36 159.5 1023 25.5
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.3e-36 159.5 889 26.2
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 3.0e-36 158.3 1106 25.8
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 3.9e-36 157.9 911 26.9
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.5e-35 156.0 122 64.8
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.9e-35 155.6 921 24.8
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 2.5e-35 155.2 789 26.0
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 2.5e-35 155.2 869 26.0
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 4.3e-35 154.5 1055 25.0
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 7.3e-35 153.7 909 26.1
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.3e-34 152.9 1083 24.7
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 1.6e-34 152.5 1083 24.7
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.6e-34 151.4 848 26.1
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.6e-34 151.4 843 26.5
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 4.8e-34 151.0 1055 24.5
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.8e-33 149.1 933 25.5
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.8e-33 149.1 1051 24.5
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 2.4e-33 148.7 418 30.6
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.0e-32 145.6 312 32.7
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.5e-32 144.4 162 47.5
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.6e-32 143.7 1032 24.2
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 2.2e-31 142.1 861 25.4
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 8.4e-31 140.2 756 25.8
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.9e-30 139.0 218 38.1
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 3.2e-30 138.3 491 27.5
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 3.3e-27 128.3 1103 23.7
vmacro10613 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.3e-27 127.9 285 36.1
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 7.4e-27 127.1 754 26.1
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.8e-26 125.2 855 24.3
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 2.0e-24 119.0 331 29.6
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 2.6e-24 118.6 567 25.7
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.5e-24 117.9 88 64.8
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 2.2e-23 115.5 254 34.3
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.4e-22 112.8 832 23.7
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.5e-21 108.2 411 32.6
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 8.7e-20 103.6 116 43.1
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 4.3e-19 101.3 634 27.1
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 6.2e-18 97.4 83 56.6
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 1.1e-17 96.7 114 46.5
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.0e-15 90.1 83 53.0
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 1.3e-15 89.7 80 56.2
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 5.0e-15 87.8 650 23.5
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 3.2e-14 85.1 128 40.6
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.2e-14 84.7 539 23.4
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 1.2e-13 83.2 141 32.6
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 3.5e-13 81.6 66 57.6
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 7.9e-13 80.5 909 21.6
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.8e-12 79.3 1044 23.6
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 5.7e-11 74.3 120 31.7
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 7.4e-11 73.9 130 32.3
Lj6P751T20 Lonicera japonica HOM05D001849 ORTHO05D235420 2.4e-09 68.9 173 39.3


User provided reference genes

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