Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04572 Davidia involucrata HOM05D002513 ORTHO05D002720 1.9e-49 198.7 95 100.0
Dinv01251 Davidia involucrata HOM05D002513 ORTHO05D002720 1.8e-42 175.6 86 96.5
Dinv25391 Davidia involucrata HOM05D002513 ORTHO05D002720 4.8e-40 167.5 86 93.0
Dinv39163 Davidia involucrata HOM05D002513 ORTHO05D002720 1.0e-37 159.8 82 92.7
Dinv21651 Davidia involucrata HOM05D002513 ORTHO05D002720 8.8e-34 146.7 83 86.7
CSS0000182 Camellia sinensis var. sinensis HOM05D002513 ORTHO05D002720 4.5e-30 134.4 84 77.4
GSVIVG01006271001 Vitis vinifera HOM05D002513 ORTHO05D002720 7.7e-30 133.7 83 74.7
Lj2A222G48 Lonicera japonica HOM05D002513 ORTHO05D002720 2.9e-29 131.7 87 72.4
Actinidia02147 Actinidia chinensis HOM05D002513 ORTHO05D002720 6.5e-29 130.6 84 77.4
Actinidia14412 Actinidia chinensis HOM05D002513 ORTHO05D002720 1.5e-28 129.4 82 73.2
Thecc.03G248600 Theobroma cacao HOM05D002513 ORTHO05D002720 3.2e-28 128.3 83 74.7
Hma1.2p1_0316F.1_g122910 Hydrangea macrophylla HOM05D002513 ORTHO05D002720 7.2e-28 127.1 81 76.5
Hma1.2p1_0316F.1_g122915 Hydrangea macrophylla HOM05D002513 ORTHO05D002720 7.2e-28 127.1 81 76.5
vmacro00186 Vaccinium macrocarpon HOM05D002513 ORTHO05D002720 7.2e-28 127.1 81 72.8
TAR629G3140 Trochodendron aralioides HOM05D002513 ORTHO05D002720 9.4e-28 126.7 84 71.4
COL.COLO4_37135 Corchorus olitorius HOM05D002513 ORTHO05D002720 1.2e-27 126.3 83 73.5
Rhsim11G0000900 Rhododendron simsii HOM05D002513 ORTHO05D002720 4.7e-27 124.4 77 74.0
Nitab4.5_0006555g0030 Nicotiana tabacum HOM05D002513 ORTHO05D002720 6.1e-27 124.0 82 72.0
Duzib068G0483 Durio zibethinus HOM05D002513 ORTHO05D002720 8.0e-27 123.6 83 71.1
Gohir.A12G215700 Gossypium hirsutum HOM05D002513 ORTHO05D002720 1.4e-26 122.9 83 72.3
Gorai.008G233900 Gossypium raimondii HOM05D002513 ORTHO05D002720 1.8e-26 122.5 83 72.3
Nitab4.5_0004277g0010 Nicotiana tabacum HOM05D002513 ORTHO05D002720 3.0e-26 121.7 82 70.7
Peaxi162Scf01662g00119 Petunia axillaris HOM05D002513 ORTHO05D002720 3.0e-26 121.7 82 69.5
Nn4g26338 Nelumbo nucifera HOM05D002513 ORTHO05D002720 4.0e-26 121.3 84 71.4
Solyc10g083150.3 Solanum lycopersicum HOM05D002513 ORTHO05D002720 4.0e-26 121.3 82 67.1
Atru.chr9.1284 Acer truncatum HOM05D002513 ORTHO05D002720 5.2e-26 120.9 82 68.3
Gohir.D12G218300 Gossypium hirsutum HOM05D002513 ORTHO05D002720 5.2e-26 120.9 83 71.1
Sopen10g032620 Solanum pennellii HOM05D002513 ORTHO05D002720 5.2e-26 120.9 82 67.1
Cpa.g.sc29.189 Carica papaya HOM05D002513 ORTHO05D002720 8.8e-26 120.2 84 67.9
Haze_07948 Corylus avellana HOM05D002513 ORTHO05D002720 8.8e-26 120.2 83 71.1
Duzib205G1336 Durio zibethinus HOM05D002513 ORTHO05D002720 1.5e-25 119.4 83 68.7
QL12p011564 Quercus lobata HOM05D002513 ORTHO05D002720 2.6e-25 118.6 83 69.9
Migut.A01126 Erythranthe guttata HOM05D002513 ORTHO05D002720 3.3e-25 118.2 82 68.3
Nn1g02339 Nelumbo nucifera HOM05D002513 ORTHO05D002720 4.4e-25 117.9 81 71.6
Gohir.A08G168800 Gossypium hirsutum HOM05D002513 ORTHO05D002720 1.3e-24 116.3 83 66.3
PGR042G3434 Punica granatum HOM05D002513 ORTHO05D002720 1.3e-24 116.3 83 67.5
Gohir.D08G187300 Gossypium hirsutum HOM05D002513 ORTHO05D002720 1.7e-24 115.9 83 66.3
Gorai.004G197000 Gossypium raimondii HOM05D002513 ORTHO05D002720 1.7e-24 115.9 83 66.3
Manes.01G082800 Manihot esculenta HOM05D002513 ORTHO05D002720 1.7e-24 115.9 83 66.3
Sabra03G0048900 Salix brachista HOM05D002513 ORTHO05D002720 1.7e-24 115.9 83 67.5
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 2.8e-24 115.2 85 68.2
Lj8A268G24 Lonicera japonica HOM05D002513 ORTHO05D002720 6.3e-24 114.0 82 68.3
Potri.003G078800 Populus trichocarpa HOM05D002513 ORTHO05D002720 6.3e-24 114.0 83 66.3
CsaV3_3G002590 Cucumis sativus L. HOM05D002513 ORTHO05D002720 8.2e-24 113.6 83 67.5
Oeu002328.2 Olea europaea HOM05D002513 ORTHO05D002720 8.2e-24 113.6 83 68.7
Oeu022895.1 Olea europaea HOM05D002513 ORTHO05D002720 8.2e-24 113.6 82 68.3
DCAR_027767 Daucus carota HOM05D002513 ORTHO05D002720 1.4e-23 112.8 83 66.3
TAR636G3267 Trochodendron aralioides HOM05D002513 ORTHO05D002720 3.1e-23 111.7 82 70.7
CAN.G841.7 Capsicum annuum HOM05D002513 ORTHO05D002720 4.1e-23 111.3 82 63.4
Cc08_g12210 Coffea canephora HOM05D002513 ORTHO05D002720 5.3e-23 110.9 82 64.6
Eucgr.E00408 Eucalyptus grandis HOM05D002513 ORTHO05D002720 5.3e-23 110.9 84 66.7
TWI81G0262 Tripterygium wilfordii HOM05D002513 ORTHO05D002720 9.1e-23 110.2 83 65.1
TAR633G0646 Trochodendron aralioides HOM05D002513 ORTHO05D002720 1.6e-22 109.4 84 65.5
TAR636G2655 Trochodendron aralioides HOM05D002513 ORTHO05D002720 1.6e-22 109.4 84 65.5
arahy.Tifrunner.gnm1.ann1.3AS7PC Arachis hypogaea HOM05D002513 ORTHO05D002720 2.0e-22 109.0 82 64.6
MSTRG.12118 Avicennia marina HOM05D002513 ORTHO05D002720 2.0e-22 109.0 83 63.9
Rhsim07G0110400 Rhododendron simsii HOM05D002513 ORTHO05D002720 2.0e-22 109.0 88 63.6
Sabra01G0134900 Salix brachista HOM05D002513 ORTHO05D002720 2.0e-22 109.0 83 61.4
arahy.Tifrunner.gnm1.ann1.PD7I3L Arachis hypogaea HOM05D002513 ORTHO05D002720 2.7e-22 108.6 82 65.9
ClCG10G002560 Citrullus lanatus HOM05D002513 ORTHO05D002720 2.7e-22 108.6 83 67.5
Potri.001G156000 Populus trichocarpa HOM05D002513 ORTHO05D002720 2.7e-22 108.6 83 62.7
arahy.Tifrunner.gnm1.ann1.2PBN0R Arachis hypogaea HOM05D002513 ORTHO05D002720 4.5e-22 107.8 82 64.6
arahy.Tifrunner.gnm1.ann1.18SBFH Arachis hypogaea HOM05D002513 ORTHO05D002720 5.9e-22 107.5 82 64.6
arahy.Tifrunner.gnm1.ann1.98R2QB Arachis hypogaea HOM05D002513 ORTHO05D002720 5.9e-22 107.5 82 64.6
PSO210G4067 Papaver somniferum HOM05D002513 ORTHO05D002720 5.9e-22 107.5 76 68.4
PSO832G0398 Papaver somniferum HOM05D002513 ORTHO05D002720 5.9e-22 107.5 76 68.4
Aqoxy5G00460 Aquilegia oxysepala HOM05D002513 ORTHO05D002720 1.0e-21 106.7 76 65.8
arahy.Tifrunner.gnm1.ann1.H0C62V Arachis hypogaea HOM05D002513 ORTHO05D002720 1.0e-21 106.7 82 64.6
Glyma.05G061500 Glycine max HOM05D002513 ORTHO05D002720 1.3e-21 106.3 82 62.2
Phvul.003G222100 Phaseolus vulgaris HOM05D002513 ORTHO05D002720 1.3e-21 106.3 68 70.6
arahy.Tifrunner.gnm1.ann1.VIP11X Arachis hypogaea HOM05D002513 ORTHO05D002720 1.7e-21 105.9 82 63.4
arahy.Tifrunner.gnm1.ann1.V507XA Arachis hypogaea HOM05D002513 ORTHO05D002720 2.2e-21 105.5 81 64.2
arahy.Tifrunner.gnm1.ann1.F98T17 Arachis hypogaea HOM05D002513 ORTHO05D002720 3.8e-21 104.8 82 62.2
arahy.Tifrunner.gnm1.ann1.Y2TGKW Arachis hypogaea HOM05D002513 ORTHO05D002720 3.8e-21 104.8 82 62.2
Cpa.g.sc53.64 Carica papaya HOM05D002513 ORTHO05D002720 3.8e-21 104.8 84 60.7
Glyma.17G143300 Glycine max HOM05D002513 ORTHO05D002720 3.8e-21 104.8 82 61.0
vmacro14069 Vaccinium macrocarpon HOM05D002513 ORTHO05D002720 5.0e-21 104.4 84 59.5
VMungo0251G3547 Vigna mungo HOM05D002513 ORTHO05D002720 5.0e-21 104.4 82 61.0
Ciclev10018818m.g Citrus clementina HOM05D002513 ORTHO05D002720 1.1e-20 103.2 83 66.3
CSS0008127 Camellia sinensis var. sinensis HOM05D002513 ORTHO05D002720 1.5e-20 102.8 55 87.3
HanXRQChr03g0088821 Helianthus annuus HOM05D002513 ORTHO05D002720 1.5e-20 102.8 80 62.5
Lsat_1_v5_gn_6_92441 Lactuca sativa HOM05D002513 ORTHO05D002720 1.9e-20 102.4 80 62.5
Ca_21976_v3 Cicer arietinum L. HOM05D002513 ORTHO05D002720 2.5e-20 102.1 82 63.4
SGA_v2.0_scaffold104G30173 Striga asiatica HOM05D002513 ORTHO05D002720 7.2e-20 100.5 83 61.4
Prupe.5G066400 Prunus persica HOM05D002513 ORTHO05D002720 9.4e-20 100.1 83 59.0
CiPaw.11G081500 Carya illinoinensis HOM05D002513 ORTHO05D002720 2.1e-19 99.0 76 61.8
ECA240G4211 Erigeron canadensis HOM05D002513 ORTHO05D002720 2.7e-19 98.6 82 57.3
HanXRQChr13g0417821 Helianthus annuus HOM05D002513 ORTHO05D002720 2.7e-19 98.6 84 59.5
Medtr4g100750 Medicago truncatula HOM05D002513 ORTHO05D002720 2.7e-19 98.6 81 61.7
Sc01g0008310 Simmondsia chinensis HOM05D002513 ORTHO05D002720 3.6e-19 98.2 85 61.2
Lj4g0017155 Lotus japonicus HOM05D002513 ORTHO05D002720 8.0e-19 97.1 84 60.7
Medtr5g097760 Medicago truncatula HOM05D002513 ORTHO05D002720 8.0e-19 97.1 84 59.5
THA.LOC104814469 Tarenaya hassleriana HOM05D002513 ORTHO05D002720 8.0e-19 97.1 87 55.2
arahy.Tifrunner.gnm1.ann1.AB5AZK Arachis hypogaea HOM05D002513 ORTHO05D002720 1.8e-18 95.9 82 58.5
Ca_03894_v3 Cicer arietinum L. HOM05D002513 ORTHO05D002720 1.8e-18 95.9 81 59.3
THA.LOC104798367 Tarenaya hassleriana HOM05D002513 ORTHO05D002720 2.3e-18 95.5 84 57.1
CANSAT21G1233 Cannabis sativa HOM05D002513 ORTHO05D002720 4.0e-18 94.7 83 54.2
Medtr5g081800 Medicago truncatula HOM05D002513 ORTHO05D002720 5.2e-18 94.4 81 59.3
Hund14574 Selenicereus undatus HOM05D002513 ORTHO05D002720 5.2e-18 94.4 85 61.2
Psat4g074080 Pisum sativum HOM05D002513 ORTHO05D002720 8.8e-18 93.6 80 57.5
Cfa017519 Carpinus fangiana HOM05D002513 ORTHO05D002720 1.2e-17 93.2 81 59.3
Sed0012573 Sechium edule HOM05D002513 ORTHO05D002720 1.2e-17 93.2 83 61.4
MD04G1061900 Malus domestica HOM05D002513 ORTHO05D002720 2.0e-17 92.4 81 55.6
TPR.G37621 Trifolium pratense HOM05D002070 ORTHO05D002489 5.7e-17 90.9 82 54.9
HPP92_004365 Vanilla planifolia HOM05D002513 ORTHO05D002720 5.7e-17 90.9 69 59.4
HPP92_004367 Vanilla planifolia HOM05D002513 ORTHO05D002720 5.7e-17 90.9 69 59.4
Psat5g188640 Pisum sativum HOM05D002513 ORTHO05D002720 7.5e-17 90.5 81 58.0
TPR.G24353 Trifolium pratense HOM05D002513 ORTHO05D002720 7.5e-17 90.5 81 58.0
Aqoxy2G03401 Aquilegia oxysepala HOM05D002513 ORTHO05D002720 2.2e-16 89.0 79 51.9
CDE06G2836 Ceratophyllum demersum HOM05D002513 ORTHO05D002720 2.8e-16 88.6 83 50.6
Aa31sc151G10 Aethionema arabicum HOM05D002513 ORTHO05D002720 4.8e-16 87.8 84 54.8
EL10Ac3g07351 Beta vulgaris HOM05D002513 ORTHO05D002720 8.3e-16 87.0 85 58.8
MD06G1055600 Malus domestica HOM05D002513 ORTHO05D002720 8.3e-16 87.0 75 53.3
FvH4_5g19330 Fragaria vesca HOM05D002513 ORTHO05D002720 2.4e-15 85.5 75 56.0
FAN18G4043 Fragaria x ananassa HOM05D002513 ORTHO05D002720 2.4e-15 85.5 75 56.0
RcHm_v2.0_Chr7g0203801 Rosa chinensis HOM05D002513 ORTHO05D002720 3.1e-15 85.1 81 55.6
FAN08G2557 Fragaria x ananassa HOM05D002513 ORTHO05D002720 7.0e-15 84.0 75 54.7
Aa31LG6G140 Aethionema arabicum HOM05D002513 ORTHO05D002720 9.1e-15 83.6 82 52.4
FAN04G1005 Fragaria x ananassa HOM05D002513 ORTHO05D002720 9.1e-15 83.6 75 54.7
Lalb_Chr09g0329991 Lupinus albus HOM05D002513 ORTHO05D002720 9.1e-15 83.6 77 54.5
Carub.0008s0036 Capsella rubella HOM05D002513 ORTHO05D002720 1.2e-14 83.2 84 52.4
FAN13G1831 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.2e-14 83.2 75 54.7
Lalb_Chr05g0221181 Lupinus albus HOM05D002513 ORTHO05D002720 1.6e-14 82.8 71 59.2
PSO210G5624 Papaver somniferum HOM05D002513 ORTHO05D002720 2.7e-14 82.0 80 47.5
Ah.13g077420 Amaranthus hybridus HOM05D002513 ORTHO05D002720 3.5e-14 81.6 82 53.7
COL.COLO4_10827 Corchorus olitorius HOM05D002513 ORTHO05D002720 4.5e-14 81.3 83 55.4
Haze_20631 Corylus avellana HOM05D002513 ORTHO05D002720 4.5e-14 81.3 70 58.6
CARHR173950 Cardamine hirsuta HOM05D002513 ORTHO05D002720 7.7e-14 80.5 84 50.0
AUR62020988 Chenopodium quinoa HOM05D002513 ORTHO05D002720 7.7e-14 80.5 85 54.1
Medtr5g098230 Medicago truncatula HOM05D002513 ORTHO05D002720 1.0e-13 80.1 84 51.2
SHI07795 Sapria himalayana HOM05D002513 ORTHO05D002720 1.3e-13 79.7 104 39.4
A09p23030 Brassica napus HOM05D002513 ORTHO05D002720 1.7e-13 79.3 84 50.0
BraA09t37907Z Brassica rapa HOM05D002513 ORTHO05D002720 1.7e-13 79.3 84 50.0
AL8G10610 Arabidopsis lyrata HOM05D002513 ORTHO05D002720 2.3e-13 79.0 85 51.8
arahy.Tifrunner.gnm1.ann1.40EGC8 Arachis hypogaea HOM05D002513 ORTHO05D002720 2.3e-13 79.0 79 50.6
ATR0697G259 Amborella trichopoda HOM05D002513 ORTHO05D002720 2.9e-13 78.6 85 49.4
AL7G37310 Arabidopsis lyrata HOM05D002513 ORTHO05D002720 2.9e-13 78.6 84 48.8
BcaB07g30777 Brassica carinata HOM05D002513 ORTHO05D002720 2.9e-13 78.6 84 48.8
Sp2g12130 Schrenkiella parvula HOM05D002513 ORTHO05D002720 2.9e-13 78.6 84 48.8
BcaC04g21626 Brassica carinata HOM05D002513 ORTHO05D002720 3.8e-13 78.2 84 48.8
C09p29740 Brassica napus HOM05D002513 ORTHO05D002720 3.8e-13 78.2 84 48.8
BolC9t55837H Brassica oleracea HOM05D002513 ORTHO05D002720 3.8e-13 78.2 84 48.8
SEGI_13497 Sequoiadendron giganteum HOM05D002513 ORTHO05D002720 3.8e-13 78.2 71 53.5
PSO761G0324 Papaver somniferum HOM05D002513 ORTHO05D002720 6.5e-13 77.4 80 46.2
AUR62018445 Chenopodium quinoa HOM05D002513 ORTHO05D002720 1.1e-12 76.6 84 51.2
unitig_8.g3015 Utricularia gibba HOM05D002513 ORTHO05D002720 4.2e-12 74.7 79 45.6
BcaC09g50468 Brassica carinata HOM05D002513 ORTHO05D002720 1.6e-11 72.8 84 45.2
C01p25090 Brassica napus HOM05D002513 ORTHO05D002720 1.6e-11 72.8 84 45.2
CDE07G1967 Ceratophyllum demersum HOM05D002513 ORTHO05D002720 1.6e-11 72.8 55 54.5
Lalb_Chr16g0386791 Lupinus albus HOM05D002513 ORTHO05D002720 2.1e-11 72.4 84 50.0
A01p20000 Brassica napus HOM05D002513 ORTHO05D002720 2.8e-11 72.0 83 47.0
AT5G47430 Arabidopsis thaliana HOM05D002513 ORTHO05D002720 3.6e-11 71.6 84 46.4
BolC1t02460H Brassica oleracea HOM05D002513 ORTHO05D002720 3.6e-11 71.6 84 44.0
BraA01t01923Z Brassica rapa HOM05D002513 ORTHO05D002720 4.7e-11 71.2 83 47.0
Sp7g16790 Schrenkiella parvula HOM05D002513 ORTHO05D002720 4.7e-11 71.2 84 44.0
BcaNung00096 Brassica carinata HOM05D002513 ORTHO05D002720 6.1e-11 70.9 84 45.2
AT4G17410 Arabidopsis thaliana HOM05D002513 ORTHO05D002720 4.0e-10 68.2 83 45.8
Carub.0007s2401 Capsella rubella HOM05D002513 ORTHO05D002720 4.0e-10 68.2 83 43.4
Thhalv10024408m.g Eutrema salsugineum HOM05D002513 ORTHO05D002720 6.8e-10 67.4 84 45.2
MBI05_g04442_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 8.8e-10 67.0 95 44.2
MBI11_g07615_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 1.5e-09 66.2 88 45.5
Os10g0431000 Oryza sativa ssp. japonica HOM05D002513 ORTHO05D002720 5.7e-09 64.3 77 51.9
Zm00001eb047610 Zea mays HOM05D002513 ORTHO05D002720 7.5e-09 63.9 80 45.0
Thhalv10000768m.g Eutrema salsugineum HOM05D002513 ORTHO05D002720 3.7e-08 61.6 84 44.0
PGSC0003DMG400010163 Solanum tuberosum HOM05D002513 ORTHO05D002720 3.7e-08 61.6 51 52.9
MBI05_g42865_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 8.3e-08 60.5 88 43.2
Nitab4.5_0001070g0030 Nicotiana tabacum HOM05D002513 ORTHO05D002720 1.4e-07 59.7 78 37.2
Nitab4.5_0000348g0110 Nicotiana tabacum HOM05D002513 ORTHO05D002720 3.1e-07 58.5 78 37.2
CARHR224010 Cardamine hirsuta HOM05D002513 ORTHO05D002720 7.0e-07 57.4 56 48.2
MELO3C013928.2 Cucumis melo HOM05D002513 ORTHO05D002720 7.0e-07 57.4 35 71.4
Manes.16G090700 Manihot esculenta HOM05D002513 ORTHO05D002720 2.7e-06 55.5 49 57.1
Manes.16G090800 Manihot esculenta HOM05D002513 ORTHO05D002720 2.7e-06 55.5 49 57.1
AUR62019970 Chenopodium quinoa HOM05D002513 ORTHO05D002720 4.5e-06 54.7 86 40.7
EL10Ac5g12361 Beta vulgaris HOM05D002513 ORTHO05D002720 7.8e-06 53.9 50 54.0


User provided reference genes

Program Settings