Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02869 Davidia involucrata HOM05D001978 ORTHO05D003036 4.3e-47 191.0 100 100.0
Dinv15066 Davidia involucrata HOM05D001978 ORTHO05D003036 1.8e-45 185.7 96 100.0
Dinv31781 Davidia involucrata HOM05D001978 ORTHO05D003036 1.8e-45 185.7 96 100.0
Dinv07789 Davidia involucrata HOM05D001978 ORTHO05D003036 1.5e-44 182.6 99 96.0
Dinv37732 Davidia involucrata HOM05D001978 ORTHO05D003036 8.3e-43 176.8 96 95.8
Dinv43400 Davidia involucrata HOM05D001978 ORTHO05D003036 9.5e-39 163.3 96 87.5
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 8.9e-37 156.8 96 82.3
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 5.8e-36 154.1 96 81.2
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 5.8e-36 154.1 96 81.2
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 7.6e-36 153.7 96 82.3
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 9.9e-36 153.3 96 81.2
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 1.3e-35 152.9 96 80.2
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 1.3e-35 152.9 96 80.2
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 1.7e-35 152.5 96 82.3
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 1.7e-35 152.5 96 81.2
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 2.9e-35 151.8 96 81.2
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 2.9e-35 151.8 96 81.2
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 3.8e-35 151.4 96 81.2
Cpa.g.sc125.58 Carica papaya HOM05D001978 ORTHO05D003036 4.9e-35 151.0 96 80.2
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 6.4e-35 150.6 96 81.2
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 6.4e-35 150.6 96 81.2
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 6.4e-35 150.6 96 81.2
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 6.4e-35 150.6 96 81.2
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 8.4e-35 150.2 96 80.2
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 1.1e-34 149.8 96 80.2
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.1e-34 149.8 96 80.2
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.1e-34 149.8 96 80.2
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 1.1e-34 149.8 96 79.2
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 1.4e-34 149.4 96 79.2
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 1.4e-34 149.4 96 78.1
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 1.4e-34 149.4 96 79.2
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 2.4e-34 148.7 96 81.2
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 2.4e-34 148.7 96 79.2
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.4e-34 148.7 96 79.2
Gohir.D11G078201 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.4e-34 148.7 96 80.2
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 2.4e-34 148.7 96 79.2
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 2.4e-34 148.7 96 80.2
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 3.2e-34 148.3 97 80.4
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 3.2e-34 148.3 96 79.2
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 3.2e-34 148.3 96 79.2
Gorai.007G083600 Gossypium raimondii HOM05D001978 ORTHO05D003036 3.2e-34 148.3 96 80.2
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 4.2e-34 147.9 96 78.1
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 4.2e-34 147.9 96 78.1
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 4.2e-34 147.9 96 78.1
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 4.2e-34 147.9 96 80.2
TPR.G8347 Trifolium pratense HOM05D001978 ORTHO05D003036 4.2e-34 147.9 96 80.2
TAR369G0424 Trochodendron aralioides HOM05D001978 ORTHO05D003036 4.2e-34 147.9 96 78.1
TAR633G1125 Trochodendron aralioides HOM05D001978 ORTHO05D003036 4.2e-34 147.9 96 78.1
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 5.4e-34 147.5 96 80.2
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 5.4e-34 147.5 96 80.2
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 5.4e-34 147.5 96 80.2
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 5.4e-34 147.5 96 80.2
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 7.1e-34 147.1 96 79.2
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 9.2e-34 146.7 96 78.1
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 9.2e-34 146.7 96 79.2
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 9.2e-34 146.7 96 79.2
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 9.2e-34 146.7 96 79.2
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 9.2e-34 146.7 96 77.1
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 1.2e-33 146.4 96 78.1
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 1.2e-33 146.4 96 78.1
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 1.2e-33 146.4 96 77.1
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 1.2e-33 146.4 96 78.1
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 1.6e-33 146.0 96 79.2
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 1.6e-33 146.0 96 77.1
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 2.7e-33 145.2 96 78.1
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 2.7e-33 145.2 96 76.0
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 2.7e-33 145.2 96 78.1
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 6.0e-33 144.1 96 78.1
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 7.8e-33 143.7 96 77.1
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 7.8e-33 143.7 96 77.1
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 7.8e-33 143.7 96 77.1
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 7.8e-33 143.7 96 78.1
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 1.0e-32 143.3 96 75.0
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 1.3e-32 142.9 97 77.3
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.7e-32 142.5 96 78.1
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 2.3e-32 142.1 96 76.0
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 2.3e-32 142.1 96 76.0
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 2.3e-32 142.1 96 76.0
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 2.3e-32 142.1 96 76.0
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 2.3e-32 142.1 96 76.0
THA.LOC104801971 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 2.3e-32 142.1 96 77.1
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 3.0e-32 141.7 96 75.0
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 3.9e-32 141.4 97 76.3
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 3.9e-32 141.4 98 76.5
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 3.9e-32 141.4 98 76.5
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 3.9e-32 141.4 98 76.5
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 3.9e-32 141.4 96 76.0
AUR62009426 Chenopodium quinoa HOM05D001978 ORTHO05D003036 5.1e-32 141.0 96 72.9
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 6.6e-32 140.6 97 76.3
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 1.1e-31 139.8 98 75.5
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.1e-31 139.8 98 75.5
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.1e-31 139.8 98 75.5
FAN10G1732 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.1e-31 139.8 98 75.5
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 1.1e-31 139.8 96 76.0
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 1.1e-31 139.8 96 72.9
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 1.1e-31 139.8 98 75.5
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 1.1e-31 139.8 96 72.9
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 1.5e-31 139.4 96 72.9
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.9e-31 139.0 98 75.5
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.9e-31 139.0 96 74.0
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 2.5e-31 138.7 96 74.0
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 2.5e-31 138.7 98 75.5
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 2.5e-31 138.7 96 74.0
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 3.3e-31 138.3 96 74.0
TAR636G2630 Trochodendron aralioides HOM05D001978 ORTHO05D003036 3.3e-31 138.3 96 77.1
Lj9A642T48 Lonicera japonica HOM05D001978 ORTHO05D003036 4.3e-31 137.9 96 71.9
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 5.6e-31 137.5 97 74.2
CDE09G0202 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 1.3e-30 136.3 96 74.0
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 1.6e-30 136.0 96 68.8
CDE02G0774 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 2.8e-30 135.2 96 72.9
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 2.8e-30 135.2 96 71.9
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 4.8e-30 134.4 98 75.5
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 6.2e-30 134.0 96 74.0
Dinv01996 Davidia involucrata HOM05D001978 ORTHO05D003036 1.1e-29 133.3 71 94.4
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 1.4e-29 132.9 96 69.8
Aqoxy2G04178 Aquilegia oxysepala HOM05D001978 ORTHO05D003036 2.4e-29 132.1 96 69.8
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 3.1e-29 131.7 96 71.9
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 4.0e-29 131.3 96 72.9
Ah.16g100700 Amaranthus hybridus HOM05D001978 ORTHO05D003036 6.9e-29 130.6 96 66.7
EL10Ac2g04382 Beta vulgaris HOM05D001978 ORTHO05D003036 6.9e-29 130.6 96 66.7
Sc11g0009020 Simmondsia chinensis HOM05D001978 ORTHO05D003036 2.0e-28 129.0 96 66.7
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 4.4e-28 127.9 96 69.8
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 4.4e-28 127.9 93 68.8
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 4.4e-28 127.9 96 68.8
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 4.4e-28 127.9 96 70.8
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 9.9e-28 126.7 95 69.5
Sc14g0004930 Simmondsia chinensis HOM05D001978 ORTHO05D003036 9.9e-28 126.7 96 69.8
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 9.9e-28 126.7 94 70.2
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 2.2e-27 125.6 96 69.8
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 2.2e-27 125.6 95 70.5
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 2.2e-27 125.6 96 70.8
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 2.2e-27 125.6 96 70.8
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 3.8e-27 124.8 93 69.9
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 6.4e-27 124.0 93 68.8
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 6.4e-27 124.0 96 67.7
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 6.4e-27 124.0 96 67.7
SGA_v2.0_scaffold5G02944 Striga asiatica HOM05D001978 ORTHO05D003036 6.4e-27 124.0 94 64.9
ATR0057G085 Amborella trichopoda HOM05D001978 ORTHO05D003036 3.2e-26 121.7 94 69.1
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 4.2e-26 121.3 93 67.7
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 4.2e-26 121.3 93 67.7
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 5.4e-26 120.9 96 65.6
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 5.4e-26 120.9 93 66.7
DCAR_022370 Daucus carota HOM05D001978 ORTHO05D003036 9.3e-26 120.2 96 64.6
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 9.3e-26 120.2 94 63.8
SalBow6G7160 Salvia bowleyana HOM05D001978 ORTHO05D003036 9.3e-26 120.2 94 63.8
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 1.6e-25 119.4 90 68.9
BcaC07g38951 Brassica carinata HOM05D001978 ORTHO05D003036 2.1e-25 119.0 96 64.6
BolC8t49521H Brassica oleracea HOM05D001978 ORTHO05D003036 2.1e-25 119.0 96 64.6
BcaB03g12953 Brassica carinata HOM05D001978 ORTHO05D003036 7.8e-25 117.1 96 63.5
C08p18950 Brassica napus HOM05D001978 ORTHO05D003036 1.3e-24 116.3 96 62.5
AT1G18830 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 1.7e-24 115.9 96 64.6
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 1.7e-24 115.9 93 65.6
vmacro21141 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 1.9e-23 112.5 75 76.0
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 5.6e-23 110.9 70 80.0
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 2.8e-22 108.6 97 56.7
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 3.6e-22 108.2 97 55.7
Carub.0001s1846 Capsella rubella HOM05D001978 ORTHO05D003036 8.1e-22 107.1 96 61.5
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 1.1e-21 106.7 70 75.7
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 3.1e-21 105.1 97 53.6
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 9.0e-21 103.6 91 64.8
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 9.0e-21 103.6 75 69.3
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 3.4e-20 101.7 70 72.9
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 3.4e-20 101.7 71 73.2
Mapoly0156s0008 Marchantia polymorpha HOM05D001978 ORTHO05D003036 2.9e-19 98.6 96 51.0
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 1.1e-18 96.7 70 67.1
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 1.9e-18 95.9 98 53.1
LjContig00095g0022524 Lotus japonicus HOM05D001978 ORTHO05D003036 2.4e-18 95.5 96 57.3
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 2.4e-18 95.5 98 53.1
AagrBONN_evm.TU.Sc2ySwM_117.496 Anthoceros agrestis HOM05D001978 ORTHO05D003036 2.7e-17 92.0 87 52.9
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 6.0e-17 90.9 94 51.1
Pp3c1_29660 Physcomitrium patens HOM05D001978 ORTHO05D003036 1.0e-16 90.1 94 51.1
COL.COLO4_18389 Corchorus olitorius HOM05D001978 ORTHO05D003036 3.0e-16 88.6 84 58.3
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 1.9e-15 85.9 54 79.6
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 9.6e-15 83.6 54 75.9
CBR_g4546 Chara braunii HOM05D001978 ORTHO05D003036 3.7e-14 81.6 94 43.6
CiPaw.13G008500 Carya illinoinensis HOM05D001978 ORTHO05D003036 8.1e-14 80.5 98 52.0
Cre12.g522450 Chlamydomonas reinhardtii HOM05D001978 ORTHO05D003036 2.4e-13 79.0 96 43.8
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 6.5e-11 70.9 96 42.7
PRCOL_00000726 Prasinoderma coloniale HOM05D000924 ORTHO05D001209 1.1e-10 70.1 78 44.9
Rhsim02G0169400 Rhododendron simsii HOM05D001978 ORTHO05D003036 9.3e-10 67.0 66 57.6
RhsimUnG0026200 Rhododendron simsii HOM05D007822 ORTHO05D009360 8.7e-08 60.5 46 67.4
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 2.5e-07 58.9 71 42.3
TPR.G3036 Trifolium pratense HOM05D001978 ORTHO05D003036 3.7e-06 55.1 43 62.8
TPR.G35927 Trifolium pratense HOM05D001978 ORTHO05D003036 3.7e-06 55.1 52 53.8


User provided reference genes

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