Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 1.2e-43 179.5 93 100.0
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 3.6e-32 141.4 88 85.2
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 1.4e-31 139.4 92 80.4
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 3.8e-13 78.2 65 67.7
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.1e-12 76.6 65 70.8
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 3.2e-12 75.1 64 67.2
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 3.2e-12 75.1 65 67.7
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 3.2e-12 75.1 65 69.2
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 3.2e-12 75.1 65 69.2
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 5.4e-12 74.3 65 64.6
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 9.3e-12 73.6 65 64.6
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 9.3e-12 73.6 65 67.7
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.6e-11 72.8 64 67.2
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 1.6e-11 72.8 65 69.2
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.7e-11 72.0 65 63.1
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 2.7e-11 72.0 66 62.1
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 3.5e-11 71.6 66 66.7
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 3.5e-11 71.6 65 66.2
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 4.6e-11 71.2 65 67.7
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 6.0e-11 70.9 65 67.7
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 7.8e-11 70.5 65 63.1
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 7.8e-11 70.5 65 64.6
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.0e-10 70.1 66 62.1
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.7e-10 69.3 65 67.7
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 1.7e-10 69.3 65 64.6
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.3e-10 68.9 65 61.5
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.3e-10 68.9 65 63.1
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 2.3e-10 68.9 65 66.2
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 3.0e-10 68.6 65 64.6
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 5.1e-10 67.8 65 64.6
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 5.1e-10 67.8 65 61.5
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 6.6e-10 67.4 65 63.1
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 6.6e-10 67.4 65 61.5
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 6.6e-10 67.4 65 64.6
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 8.7e-10 67.0 65 64.6
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 1.1e-09 66.6 65 63.1
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 1.1e-09 66.6 65 64.6
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 2.5e-09 65.5 65 63.1
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 2.5e-09 65.5 65 58.5
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 2.5e-09 65.5 65 60.0
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 2.5e-09 65.5 65 61.5
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 3.3e-09 65.1 65 61.5
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 3.3e-09 65.1 65 61.5
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 3.3e-09 65.1 65 63.1
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 4.3e-09 64.7 65 63.1
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 4.3e-09 64.7 65 61.5
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 5.6e-09 64.3 79 49.4
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 5.6e-09 64.3 65 61.5
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 5.6e-09 64.3 65 61.5
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 7.3e-09 63.9 65 60.0
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.3e-08 63.2 65 63.1
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 1.3e-08 63.2 65 61.5
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 1.6e-08 62.8 65 61.5
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 1.6e-08 62.8 65 61.5
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 2.1e-08 62.4 65 60.0
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 2.8e-08 62.0 65 61.5
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 2.8e-08 62.0 65 56.9
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 2.8e-08 62.0 65 63.1
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 3.6e-08 61.6 65 60.0
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 3.6e-08 61.6 65 60.0
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 4.8e-08 61.2 65 60.0
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 4.8e-08 61.2 66 59.1
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 6.2e-08 60.8 65 60.0
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 6.2e-08 60.8 65 60.0
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 6.2e-08 60.8 65 60.0
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 6.2e-08 60.8 65 61.5
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 8.1e-08 60.5 65 60.0
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 8.1e-08 60.5 65 58.5
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 1.4e-07 59.7 65 58.5
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 1.4e-07 59.7 65 58.5
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.4e-07 59.7 65 60.0
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 1.8e-07 59.3 65 55.4
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.8e-07 59.3 65 58.5
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 1.8e-07 59.3 65 58.5
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 1.8e-07 59.3 65 58.5
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 2.4e-07 58.9 65 58.5
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 2.4e-07 58.9 65 58.5
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 2.4e-07 58.9 65 58.5
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 3.1e-07 58.5 65 58.5
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 3.1e-07 58.5 65 58.5
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 3.1e-07 58.5 65 58.5
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 3.1e-07 58.5 65 58.5
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 3.1e-07 58.5 65 58.5
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 3.1e-07 58.5 65 60.0
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 4.0e-07 58.2 65 56.9
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 4.0e-07 58.2 59 62.7
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 4.0e-07 58.2 65 56.9
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 9.0e-07 57.0 65 56.9
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 1.2e-06 56.6 65 58.5
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 1.5e-06 56.2 65 58.5
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 2.6e-06 55.5 65 56.9
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 2.6e-06 55.5 65 55.4
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 2.6e-06 55.5 65 55.4
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 3.4e-06 55.1 64 56.2
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 4.4e-06 54.7 49 61.2
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 5.8e-06 54.3 49 57.1
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 5.8e-06 54.3 40 67.5
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 9.9e-06 53.5 65 55.4


User provided reference genes

Program Settings