Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031231 Daucus carota HOM05D000006 ORTHO05D004030 8.8e-30 132.9 64 100.0
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 9.8e-29 129.4 64 96.9
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 1.7e-28 128.6 64 96.9
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 2.8e-28 127.9 64 95.3
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 4.9e-28 127.1 64 93.8
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 4.9e-28 127.1 64 95.3
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 4.9e-28 127.1 64 95.3
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 4.9e-28 127.1 64 95.3
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 4.9e-28 127.1 64 95.3
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 4.9e-28 127.1 64 95.3
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 4.9e-28 127.1 64 95.3
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 4.9e-28 127.1 64 95.3
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 6.3e-28 126.7 64 93.8
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 8.3e-28 126.3 64 93.8
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 8.3e-28 126.3 64 93.8
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 1.1e-27 125.9 64 93.8
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 1.1e-27 125.9 64 93.8
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 1.1e-27 125.9 64 93.8
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 1.1e-27 125.9 64 93.8
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 1.1e-27 125.9 64 93.8
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 1.1e-27 125.9 64 93.8
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 92.2
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 92.2
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 1.4e-27 125.6 63 93.7
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 93.8
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 1.4e-27 125.6 64 92.2
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 93.8
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 93.8
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 93.8
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 93.8
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 93.8
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.8e-27 125.2 64 92.2
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 93.8
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 93.8
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 93.8
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 93.8
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 93.8
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 93.8
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 93.8
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
CARHR278580 Cardamine hirsuta HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 93.8
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 2.4e-27 124.8 64 92.2
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 3.1e-27 124.4 64 92.2
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 3.1e-27 124.4 64 92.2
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 4.1e-27 124.0 64 92.2
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 4.1e-27 124.0 64 90.6
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 4.1e-27 124.0 64 92.2
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 4.1e-27 124.0 64 90.6
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 4.1e-27 124.0 64 90.6
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 4.1e-27 124.0 64 92.2
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 4.1e-27 124.0 64 92.2
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 4.1e-27 124.0 64 90.6
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 4.1e-27 124.0 64 92.2
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 5.4e-27 123.6 64 92.2
Cpa.g.sc42.141 Carica papaya HOM05D000006 ORTHO05D004030 5.4e-27 123.6 64 92.2
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 5.4e-27 123.6 64 92.2
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 5.4e-27 123.6 64 90.6
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 5.4e-27 123.6 64 90.6
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 5.4e-27 123.6 64 92.2
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 5.4e-27 123.6 64 92.2
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 5.4e-27 123.6 64 90.6
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 7.0e-27 123.2 63 90.5
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 7.0e-27 123.2 64 90.6
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 9.2e-27 122.9 62 93.5
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 1.2e-26 122.5 64 90.6
CDE02G1825 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 1.2e-26 122.5 64 89.1
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 1.2e-26 122.5 64 89.1
Gohir.D04G003466 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.2e-26 122.5 62 93.5
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 1.2e-26 122.5 64 89.1
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 1.2e-26 122.5 64 90.6
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 1.2e-26 122.5 64 89.1
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 1.2e-26 122.5 64 90.6
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 1.2e-26 122.5 64 90.6
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 1.6e-26 122.1 64 90.6
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 2.0e-26 121.7 64 90.6
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 2.7e-26 121.3 64 90.6
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.7e-26 121.3 64 90.6
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.7e-26 121.3 64 90.6
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 2.7e-26 121.3 64 90.6
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 3.5e-26 120.9 62 90.3
Gorai.012G004600 Gossypium raimondii HOM05D000006 ORTHO05D004030 3.5e-26 120.9 62 91.9
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 3.5e-26 120.9 63 85.7
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 4.5e-26 120.6 64 89.1
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 4.5e-26 120.6 63 85.7
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 5.9e-26 120.2 64 87.5
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 5.9e-26 120.2 64 89.1
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 7.7e-26 119.8 64 89.1
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 7.7e-26 119.8 64 90.6
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 7.7e-26 119.8 62 87.1
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 1.7e-25 118.6 64 87.5
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 6.6e-25 116.7 63 84.1
Gorai.011G166000 Gossypium raimondii HOM05D000006 ORTHO05D004030 3.3e-24 114.4 64 87.5
arahy.Tifrunner.gnm1.ann1.B34789 Arachis hypogaea HOM05D000006 ORTHO05D004030 1.2e-23 112.5 64 82.8
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 1.2e-23 112.5 63 79.4
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.6e-23 112.1 63 77.8
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.1e-23 111.7 62 75.8
arahy.Tifrunner.gnm1.ann1.D5YD9F Arachis hypogaea HOM05D000006 ORTHO05D004030 5.2e-22 107.1 64 79.7
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 3.9e-17 90.9 62 62.9
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 1.1e-16 89.4 53 83.0
PRCOL_00001934 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 2.1e-15 85.1 60 60.0
arahy.Tifrunner.gnm1.ann1.KN38JA Arachis hypogaea HOM05D000006 ORTHO05D004030 4.7e-15 84.0 47 85.1
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 1.4e-14 82.4 62 54.8
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 6.8e-14 80.1 63 63.5
Mapoly0014s0220 Marchantia polymorpha HOM05D000006 ORTHO05D004030 1.9e-11 72.0 60 55.0
BcaC01g02690 Brassica carinata HOM05D000006 ORTHO05D004030 2.7e-10 68.2 64 60.9
C03p61600 Brassica napus HOM05D000006 ORTHO05D004030 2.7e-10 68.2 64 60.9
Haze_27167 Corylus avellana HOM05D000006 ORTHO05D004030 7.8e-10 66.6 65 50.8
Pp3c13_14710 Physcomitrium patens HOM05D000006 ORTHO05D004030 3.0e-09 64.7 33 90.9
SEGI_24978 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 3.0e-09 64.7 60 50.0
Pp3c2_37980 Physcomitrium patens HOM05D000006 ORTHO05D004030 8.6e-09 63.2 59 49.2
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 2.8e-07 58.2 59 45.8
PRCOL_00006094 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 2.3e-06 55.1 54 44.4


User provided reference genes

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