Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 3628.6 1936 100.0
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2661.7 1971 75.1
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2232.2 1962 66.0
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2151.3 1862 65.1
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2117.0 1871 63.1
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2094.3 1960 62.4
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2074.3 1948 61.5
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2062.7 1937 61.5
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2053.1 1965 60.9
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2050.4 1956 61.8
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2045.4 1948 60.8
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2041.5 1979 61.0
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2035.8 1866 62.0
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2033.5 1870 61.3
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2030.4 1806 63.0
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2030.0 1860 61.1
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2027.7 1859 62.0
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2026.9 1959 60.3
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2025.0 1902 61.3
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2011.9 1850 61.2
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1999.9 1851 60.3
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1996.9 1837 60.9
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1996.9 1956 58.6
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1990.7 1857 59.9
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1988.4 1864 60.1
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1985.7 1789 62.1
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1976.1 1853 60.7
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1975.3 1957 59.6
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1975.3 1865 60.3
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1974.1 1957 59.6
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1974.1 1857 60.0
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1972.2 1811 61.2
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1970.7 1957 60.0
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1969.9 1863 59.8
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1967.6 1891 61.9
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1967.6 1946 59.7
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1966.8 1963 59.8
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1958.0 1866 60.1
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1957.2 1965 59.5
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1956.8 1865 60.1
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1955.6 1948 58.9
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1951.8 1963 59.7
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1948.3 1846 59.6
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1947.6 1855 59.5
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1946.4 1858 60.1
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1945.6 1954 57.6
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1941.8 1852 59.4
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1941.4 1855 59.6
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1932.9 1890 58.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1931.8 1790 60.4
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1931.4 1935 59.6
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1931.4 1962 58.8
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1926.4 1851 59.3
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1924.1 1952 58.9
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1922.5 1855 58.4
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1922.1 1845 58.8
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1921.7 1976 58.2
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1913.7 1936 59.1
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1913.3 1848 59.4
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1912.1 1823 59.7
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1911.7 1858 58.7
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1906.3 1853 59.0
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1903.3 1956 57.8
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1901.7 1871 58.3
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1897.1 1864 58.0
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1895.2 1852 58.0
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1893.2 1958 57.9
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1890.5 1966 58.2
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1887.5 1957 57.8
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1887.5 1951 58.7
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1866.7 1853 58.1
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1864.4 1855 57.4
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1855.1 1850 57.2
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1841.6 1851 57.2
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1837.4 1901 57.4
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1836.6 1902 57.6
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1831.6 1689 61.8
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1822.0 1870 56.2
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1801.9 1767 61.1
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1800.0 1960 56.4
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1794.6 1923 57.0
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1770.4 1850 55.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1748.0 1857 55.5
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1732.6 1874 54.6
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1716.0 1754 56.8
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1715.3 1902 53.5
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1711.0 1857 53.6
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1706.4 1954 53.5
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1630.5 1908 50.6
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1627.8 1928 50.2
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1623.2 1911 50.8
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1620.1 1911 50.8
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1615.1 1917 50.3
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1612.0 1910 50.5
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1592.4 1911 49.9
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1592.0 1995 50.1
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1591.2 1909 50.3
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1589.7 1889 50.5
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1577.8 1907 49.8
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1577.4 1919 49.7
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1577.4 1921 49.6
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1576.6 1922 49.4
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1576.6 1922 49.4
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1568.9 1869 51.3
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1564.7 1910 49.5
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1561.6 1852 49.6
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1530.4 1847 49.1
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1422.5 1964 46.3
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1410.2 1914 46.3
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1410.2 1914 46.3
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1394.4 1253 64.3
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1385.9 1863 45.9
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1370.5 1240 61.4
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1352.0 1887 46.1
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1343.6 1232 63.5
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1342.4 1506 55.4
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1314.3 1868 45.4
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1286.6 1438 54.4
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1204.9 992 66.5
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1160.2 1818 42.9
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1107.0 1539 47.0
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 3.5e-310 1069.3 949 64.2
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.8e-305 1051.2 925 63.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 3.2e-279 966.5 1334 48.7
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 7.9e-270 935.3 860 61.3
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 6.0e-262 909.1 1462 43.9
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.3e-261 907.1 740 65.5
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 9.6e-260 901.7 1622 39.5
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.9e-247 860.9 791 61.8
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.3e-240 838.2 1852 34.9
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.0e-229 800.4 861 53.2
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.5e-183 646.0 502 64.9
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.4e-173 615.5 662 53.2
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 2.0e-172 611.7 644 51.7
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 6.9e-157 560.1 714 47.3
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 4.6e-153 547.4 497 58.8
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.6e-145 522.3 614 50.2
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.7e-145 521.5 338 74.0
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.4e-135 486.9 445 57.8
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.4e-125 456.1 446 56.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.4e-109 402.9 1254 27.9
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 3.1e-109 401.7 421 54.4
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.8e-80 306.2 488 43.0
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.0e-79 302.8 642 34.9
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.2e-77 295.4 489 39.3
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.5e-74 286.6 2080 22.6
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 7.8e-68 264.2 854 30.7
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.3e-66 258.5 224 65.6
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.1e-57 229.6 193 68.4
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 3.6e-57 228.8 161 69.6
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 2.7e-52 212.6 508 35.6
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.6e-47 196.1 453 34.7
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 6.4e-38 164.9 270 38.9
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 2.4e-37 162.9 216 50.9
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.1e-28 133.3 76 80.3
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 8.2e-17 94.7 67 68.7
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 6.1e-12 78.6 52 65.4
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 8.8e-11 74.7 212 33.0
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 1.5e-10 73.9 96 47.9
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.5e-10 73.9 109 39.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 2.4e-08 66.6 33 81.8
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.2e-07 64.3 60 53.3
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.5e-07 63.9 59 55.9


User provided reference genes

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