Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 0.0e+00 1555.0 898 100.0
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 0.0e+00 1083.2 880 69.9
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 4.5e-305 1051.2 894 66.2
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 3.6e-294 1015.0 898 64.5
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 7.7e-289 997.3 847 65.8
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.2e-286 989.9 850 65.6
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 4.1e-282 974.9 853 64.2
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 5.9e-281 971.1 933 63.3
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.3e-280 969.9 850 64.7
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.8e-280 968.4 896 61.3
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.9e-279 966.1 918 64.8
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 2.7e-278 962.2 906 61.3
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 4.0e-277 958.4 896 62.3
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 4.0e-277 958.4 897 61.6
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 2.6e-276 955.7 900 60.7
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 2.8e-275 952.2 889 62.0
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 4.9e-275 951.4 852 62.9
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 1.4e-274 949.9 887 63.0
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.7e-272 943.0 892 60.7
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 8.6e-272 940.6 936 61.1
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 8.6e-272 940.6 886 60.4
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.1e-271 940.3 884 60.1
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 2.5e-271 939.1 881 61.6
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 3.3e-271 938.7 906 59.1
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 4.3e-271 938.3 954 57.3
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.5e-268 929.9 889 60.9
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 2.9e-267 925.6 872 61.2
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 6.4e-267 924.5 887 60.3
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 8.3e-267 924.1 869 60.9
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.1e-266 923.7 935 57.6
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 1.3e-264 916.8 884 61.0
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 8.6e-264 914.1 937 60.4
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 1.1e-263 913.7 888 60.5
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 4.3e-263 911.8 803 64.5
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.2e-262 910.2 873 60.4
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.1e-262 909.4 893 59.7
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 8.0e-262 907.5 841 61.7
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.0e-261 907.1 896 59.4
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.0e-261 907.1 976 55.5
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 4.0e-261 905.2 884 59.3
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 7.5e-260 901.0 884 58.3
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 9.8e-260 900.6 889 59.2
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 3.7e-259 898.7 893 60.0
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 2.0e-257 892.9 867 60.0
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 7.8e-257 891.0 834 61.8
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.0e-256 889.0 858 60.0
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 3.0e-256 889.0 897 59.1
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 5.0e-256 888.3 896 59.0
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.5e-255 886.7 886 57.4
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 2.5e-255 885.9 895 58.8
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.6e-254 883.2 936 55.7
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 3.1e-253 879.0 785 63.4
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 5.8e-252 874.8 891 56.9
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 1.7e-251 873.2 889 57.5
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 4.1e-250 868.6 855 58.6
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 3.9e-248 862.1 838 60.3
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.5e-247 860.1 884 58.3
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.6e-246 855.5 885 57.3
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 4.7e-246 855.1 877 56.3
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 2.3e-245 852.8 893 56.7
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 6.8e-245 851.3 885 56.9
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 8.9e-245 850.9 870 56.7
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 2.9e-243 845.9 890 56.6
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 4.9e-243 845.1 876 57.3
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 1.2e-241 840.5 887 55.7
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 3.5e-241 839.0 934 54.3
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 3.5e-241 839.0 920 55.3
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 4.6e-241 838.6 885 56.5
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.6e-238 830.1 854 56.3
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 6.2e-238 828.2 910 54.2
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.1e-237 827.4 884 55.7
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 1.5e-236 823.5 931 53.1
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 4.4e-236 822.0 863 55.7
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 1.7e-235 820.1 883 53.8
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 3.0e-232 809.3 845 55.0
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 9.6e-231 804.3 888 54.7
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 4.8e-230 802.0 879 54.9
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.2e-228 797.3 893 54.5
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 9.3e-226 787.7 870 55.3
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 1.2e-225 787.3 791 57.0
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 7.9e-225 784.6 915 53.2
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.0e-224 784.3 835 55.2
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 3.4e-220 769.2 844 53.2
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 5.8e-220 768.5 696 62.8
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.5e-217 759.2 930 50.3
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 2.3e-216 756.5 619 65.4
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 2.5e-215 753.1 886 51.1
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 1.6e-214 750.4 875 52.1
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 1.0e-211 741.1 870 51.6
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 2.2e-211 740.0 877 50.3
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 2.2e-211 740.0 877 50.3
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 1.1e-210 737.6 875 52.0
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 5.5e-210 735.3 869 51.8
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 1.0e-208 731.1 881 50.1
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 6.7e-208 728.4 861 51.7
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 1.1e-207 727.6 932 48.9
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 3.7e-206 722.6 878 49.5
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 8.2e-206 721.5 883 50.3
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 4.6e-201 705.7 880 49.9
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 6.7e-200 701.8 831 50.1
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 5.7e-199 698.7 870 49.5
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 2.4e-197 693.3 890 48.8
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 1.0e-195 688.0 870 49.1
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 6.7e-192 675.2 924 47.6
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 1.1e-189 667.9 848 48.8
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 3.2e-186 656.4 919 44.6
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 4.2e-178 629.4 914 45.0
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 9.4e-178 628.2 477 68.1
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.1e-170 604.7 485 65.2
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 8.0e-169 598.6 914 43.8
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 2.8e-166 590.1 862 44.2
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 1.2e-159 568.2 867 43.0
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.2e-156 558.1 481 61.1
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 3.6e-153 546.6 830 42.0
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 3.1e-136 490.3 550 53.1
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 2.0e-119 434.5 908 36.0
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 4.9e-110 403.3 482 49.6
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 4.6e-92 343.6 449 46.5
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.9e-90 338.2 318 57.9
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 9.7e-90 335.9 359 57.7
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 4.8e-89 333.6 443 46.5
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 5.0e-86 323.6 415 52.3
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 2.6e-79 301.2 361 53.2
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 2.2e-78 298.1 386 46.9
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 6.5e-78 296.6 295 54.6
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.6e-74 284.6 256 60.2
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 7.0e-72 276.6 388 49.5
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.0e-67 261.2 380 51.3
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 1.5e-66 258.8 803 28.9
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.1e-64 252.7 170 73.5
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 1.0e-62 246.1 612 28.6
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 4.8e-49 200.7 317 44.5
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 7.7e-47 193.4 161 57.8
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.7e-36 157.5 151 63.6
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.4e-35 156.0 151 63.6
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 5.2e-27 127.5 96 58.3
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.1e-24 119.8 196 40.8
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 4.3e-21 107.8 77 66.2
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.2e-18 99.8 77 63.6
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.4e-16 92.8 84 53.6
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 2.4e-16 92.0 65 75.4
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.9e-13 82.4 90 53.3
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.3e-13 81.6 90 51.1
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 4.3e-13 81.3 76 56.6
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 2.8e-12 78.6 141 44.7
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.2e-09 68.9 122 34.4
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 9.2e-08 63.5 100 44.0
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 1.0e-06 60.1 62 48.4
EL10Ac2g03784 Beta vulgaris HOM05D004199 ORTHO05D019838 1.0e-06 60.1 72 48.6
EL10Ac3g06366 Beta vulgaris HOM05D004199 ORTHO05D019838 1.3e-06 59.7 81 44.4
MBI01_g08784_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D242530 6.6e-06 57.4 81 48.1


User provided reference genes

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