Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027270 Daucus carota HOM05D002720 ORTHO05D002901 4.6e-25 117.1 59 100.0
DCAR_027272 Daucus carota HOM05D002720 ORTHO05D002901 2.1e-17 91.7 59 74.6
DCAR_002773 Daucus carota HOM05D002117 ORTHO05D002151 6.1e-17 90.1 58 72.4
DCAR_024224 Daucus carota HOM05D002492 ORTHO05D002621 3.7e-14 80.9 59 66.1
Actinidia40090 Actinidia chinensis HOM05D002720 ORTHO05D002901 3.4e-12 74.3 58 55.2
Migut.G00434 Erythranthe guttata HOM05D002720 ORTHO05D002901 5.9e-12 73.6 58 56.9
Aa31LG9G2670 Aethionema arabicum HOM05D002720 ORTHO05D002901 1.0e-11 72.8 58 56.9
Rhsim04G0190900 Rhododendron simsii HOM05D002720 ORTHO05D002901 1.7e-11 72.0 58 53.4
vmacro08613 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 1.7e-11 72.0 58 53.4
EL10Ac9g20857 Beta vulgaris HOM05D002720 ORTHO05D002901 2.9e-11 71.2 59 54.2
CARHR221020 Cardamine hirsuta HOM05D002720 ORTHO05D002901 2.9e-11 71.2 59 52.5
AT4G14660 Arabidopsis thaliana HOM05D002720 ORTHO05D002901 3.8e-11 70.9 58 51.7
THA.LOC104808579 Tarenaya hassleriana HOM05D002720 ORTHO05D002901 3.8e-11 70.9 58 53.4
vmacro08407 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 3.8e-11 70.9 58 51.7
Lj6C656T10 Lonicera japonica HOM05D002720 ORTHO05D002901 5.0e-11 70.5 58 55.2
Rhsim04G0192700 Rhododendron simsii HOM05D002720 ORTHO05D002901 5.0e-11 70.5 58 51.7
Psat6g128440 Pisum sativum HOM05D002720 ORTHO05D002901 6.5e-11 70.1 58 55.2
QL09p012554 Quercus lobata HOM05D002720 ORTHO05D002901 6.5e-11 70.1 58 51.7
unitig_899.g14889 Utricularia gibba HOM05D002720 ORTHO05D002901 6.5e-11 70.1 58 53.4
AL7G41430 Arabidopsis lyrata HOM05D002720 ORTHO05D002901 8.5e-11 69.7 58 53.4
Dinv44630 Davidia involucrata HOM05D002720 ORTHO05D002901 8.5e-11 69.7 58 53.4
Ciclev10006012m.g Citrus clementina HOM05D002720 ORTHO05D002901 1.1e-10 69.3 58 53.4
Sopen02g019870 Solanum pennellii HOM05D002720 ORTHO05D002901 1.1e-10 69.3 58 51.7
AUR62019525 Chenopodium quinoa HOM05D002720 ORTHO05D002901 1.4e-10 68.9 59 54.2
AUR62036114 Chenopodium quinoa HOM05D002720 ORTHO05D002901 1.4e-10 68.9 59 54.2
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 1.4e-10 68.9 58 55.2
Medtr1g475140 Medicago truncatula HOM05D002720 ORTHO05D002901 1.4e-10 68.9 58 55.2
QL09p012558 Quercus lobata HOM05D002720 ORTHO05D002901 1.4e-10 68.9 58 51.7
CAN.G650.21 Capsicum annuum HOM05D002720 ORTHO05D002901 1.9e-10 68.6 58 51.7
Thhalv10026369m.g Eutrema salsugineum HOM05D002720 ORTHO05D002901 1.9e-10 68.6 58 53.4
Oeu030668.1 Olea europaea HOM05D002720 ORTHO05D002901 1.9e-10 68.6 58 53.4
Thecc.10G145800 Theobroma cacao HOM05D002720 ORTHO05D002901 1.9e-10 68.6 58 53.4
TWI73G0137 Tripterygium wilfordii HOM05D002720 ORTHO05D002901 1.9e-10 68.6 59 52.5
BcaB04g18254 Brassica carinata HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 53.4
BcaC07g37842 Brassica carinata HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 53.4
A08p11370 Brassica napus HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 53.4
BolC8t48229H Brassica oleracea HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 53.4
BraA08t33130Z Brassica rapa HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 53.4
CSS0039978 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 50.0
Duzib114G0436 Durio zibethinus HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 51.7
Eucgr.H03255 Eucalyptus grandis HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 51.7
Eucgr.L02850 Eucalyptus grandis HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 51.7
TPR.G28896 Trifolium pratense HOM05D002720 ORTHO05D002901 2.5e-10 68.2 58 55.2
FAN12G1351 Fragaria x ananassa HOM05D002720 ORTHO05D002901 3.2e-10 67.8 58 53.4
FAN17G1273 Fragaria x ananassa HOM05D002720 ORTHO05D002901 3.2e-10 67.8 58 50.0
Hma1.2p1_0065F.1_g035630 Hydrangea macrophylla HOM05D002720 ORTHO05D002901 3.2e-10 67.8 58 53.4
Lalb_Chr16g0384831 Lupinus albus HOM05D002720 ORTHO05D002901 3.2e-10 67.8 58 51.7
RcHm_v2.0_Chr4g0390271 Rosa chinensis HOM05D002720 ORTHO05D002901 3.2e-10 67.8 58 51.7
BolC1t02790H Brassica oleracea HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 53.4
FvH4_4g12050 Fragaria vesca HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 50.0
FAN12G2103 Fragaria x ananassa HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 50.0
FAN12G3038 Fragaria x ananassa HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 50.0
Sp7g12770 Schrenkiella parvula HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 51.7
Solyc03g118380.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 51.7
Sopen03g037280 Solanum pennellii HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 51.7
PGSC0003DMG400008310 Solanum tuberosum HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 51.7
PGSC0003DMG400014251 Solanum tuberosum HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 51.7
PGSC0003DMG400027588 Solanum tuberosum HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 51.7
Thecc.10G145600 Theobroma cacao HOM05D002720 ORTHO05D002901 4.2e-10 67.4 58 51.7
C01p28630 Brassica napus HOM05D002720 ORTHO05D002901 5.5e-10 67.0 58 53.4
Cpa.g.sc2.369 Carica papaya HOM05D002720 ORTHO05D002901 5.5e-10 67.0 58 51.7
Duzib114G1034 Durio zibethinus HOM05D002720 ORTHO05D002901 5.5e-10 67.0 58 51.7
Glyma.20G204700 Glycine max HOM05D002720 ORTHO05D002901 5.5e-10 67.0 58 51.7
Lj5g0020726 Lotus japonicus HOM05D002720 ORTHO05D002901 5.5e-10 67.0 58 51.7
FAN07G0794 Fragaria x ananassa HOM05D002720 ORTHO05D002901 7.2e-10 66.6 58 48.3
Nitab4.5_0006814g0010 Nicotiana tabacum HOM05D002720 ORTHO05D002901 7.2e-10 66.6 58 50.0
Potri.008G161700 Populus trichocarpa HOM05D002720 ORTHO05D002901 7.2e-10 66.6 58 46.6
SalBow2G1684 Salvia bowleyana HOM05D002720 ORTHO05D002901 7.2e-10 66.6 58 50.0
Thecc.10G146200 Theobroma cacao HOM05D002720 ORTHO05D002901 7.2e-10 66.6 58 51.7
Carub.0007s2754 Capsella rubella HOM05D002720 ORTHO05D002901 9.4e-10 66.2 58 50.0
Peaxi162Scf00065g00144 Petunia axillaris HOM05D002720 ORTHO05D002901 9.4e-10 66.2 58 50.0
Potri.010G077300 Populus trichocarpa HOM05D002720 ORTHO05D002901 9.4e-10 66.2 58 46.6
Sabra10G0031500 Salix brachista HOM05D002720 ORTHO05D002901 9.4e-10 66.2 58 46.6
SHI00593 Sapria himalayana HOM05D002720 ORTHO05D002901 9.4e-10 66.2 58 48.3
Sed0027773 Sechium edule HOM05D002720 ORTHO05D002901 9.4e-10 66.2 58 50.0
Sc19g0003810 Simmondsia chinensis HOM05D002720 ORTHO05D002901 9.4e-10 66.2 59 49.2
MSTRG.4098 Avicennia marina HOM05D002720 ORTHO05D002901 1.2e-09 65.9 58 51.7
MELO3C026776.2 Cucumis melo HOM05D002720 ORTHO05D002901 1.2e-09 65.9 58 48.3
CsaV3_2G013070 Cucumis sativus L. HOM05D002720 ORTHO05D002901 1.2e-09 65.9 58 48.3
Eucgr.H03254 Eucalyptus grandis HOM05D002720 ORTHO05D002901 1.2e-09 65.9 58 48.3
SHI27528 Sapria himalayana HOM05D002720 ORTHO05D002901 1.2e-09 65.9 58 48.3
PGSC0003DMG400028430 Solanum tuberosum HOM05D002720 ORTHO05D002901 1.2e-09 65.9 58 51.7
SGA_v2.0_scaffold88G27291 Striga asiatica HOM05D002720 ORTHO05D002901 1.2e-09 65.9 58 48.3
Gohir.A05G283100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 1.6e-09 65.5 58 50.0
Gohir.D05G284100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 1.6e-09 65.5 58 50.0
Gorai.009G298700 Gossypium raimondii HOM05D002720 ORTHO05D002901 1.6e-09 65.5 58 50.0
Manes.07G037400 Manihot esculenta HOM05D002720 ORTHO05D002901 1.6e-09 65.5 58 50.0
Peaxi162Scf00065g00145 Petunia axillaris HOM05D002720 ORTHO05D002901 1.6e-09 65.5 58 48.3
Phvul.L002059 Phaseolus vulgaris HOM05D002720 ORTHO05D002901 1.6e-09 65.5 58 50.0
GSVIVG01018108001 Vitis vinifera HOM05D002720 ORTHO05D002901 1.6e-09 65.5 58 48.3
CANSAT78G0519 Cannabis sativa HOM05D002720 ORTHO05D002901 2.7e-09 64.7 58 48.3
Cc02_g21580 Coffea canephora HOM05D002720 ORTHO05D002901 2.7e-09 64.7 59 54.2
Migut.G00425 Erythranthe guttata HOM05D002720 ORTHO05D002901 2.7e-09 64.7 59 52.5
Lalb_Chr06g0169331 Lupinus albus HOM05D002720 ORTHO05D002901 2.7e-09 64.7 58 51.7
PGR004G0769 Punica granatum HOM05D002720 ORTHO05D002901 2.7e-09 64.7 58 46.6
SalBow6G3689 Salvia bowleyana HOM05D002720 ORTHO05D002901 2.7e-09 64.7 58 46.6
BcaC09g50136 Brassica carinata HOM05D002720 ORTHO05D002901 3.6e-09 64.3 58 51.7
Prupe.1G030000 Prunus persica HOM05D002720 ORTHO05D002901 3.6e-09 64.3 58 48.3
PGR119G0175 Punica granatum HOM05D002720 ORTHO05D002901 3.6e-09 64.3 58 46.6
Sopen06g014100 Solanum pennellii HOM05D002720 ORTHO05D002901 3.6e-09 64.3 58 50.0
CAN.G2602.2 Capsicum annuum HOM05D002720 ORTHO05D002901 4.7e-09 63.9 58 46.6
VMungo0720G2991 Vigna mungo HOM05D002720 ORTHO05D002901 4.7e-09 63.9 58 48.3
MSTRG.9927 Avicennia marina HOM05D002720 ORTHO05D002901 6.1e-09 63.5 58 50.0
MBI04_g39240_MAGBIO Magnolia biondii HOM05D002720 ORTHO05D002901 6.1e-09 63.5 58 50.0
CSS0035657 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 7.9e-09 63.2 58 48.3
MD16G1207700 Malus domestica HOM05D002720 ORTHO05D002901 7.9e-09 63.2 58 46.6
Solyc06g033895.1 Solanum lycopersicum HOM05D002720 ORTHO05D002901 7.9e-09 63.2 58 50.0
TAR633G1171 Trochodendron aralioides HOM05D002720 ORTHO05D002901 1.4e-08 62.4 58 48.3
Zm00001eb282600 Zea mays HOM05D002720 ORTHO05D002901 1.8e-08 62.0 59 45.8
Atru.chr4.2236 Acer truncatum HOM05D002720 ORTHO05D002901 3.0e-08 61.2 58 44.8
Os05g0157100 Oryza sativa ssp. japonica HOM05D002720 ORTHO05D002901 3.9e-08 60.8 59 45.8
ATR0665G044 Amborella trichopoda HOM05D002720 ORTHO05D002901 5.1e-08 60.5 58 44.8
Hund05271 Selenicereus undatus HOM05D002720 ORTHO05D002901 5.1e-08 60.5 59 44.1
Nn1g02586 Nelumbo nucifera HOM05D002720 ORTHO05D002901 6.7e-08 60.1 55 43.6
Solyc09g048970.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 6.7e-08 60.1 56 48.2
HanXRQChr13g0424551 Helianthus annuus HOM05D002720 ORTHO05D002901 8.8e-08 59.7 60 50.0
PSO339G3626 Papaver somniferum HOM05D002720 ORTHO05D002901 1.1e-07 59.3 58 43.1
PSO384G2822 Papaver somniferum HOM05D002720 ORTHO05D002901 1.1e-07 59.3 58 43.1
RcHm_v2.0_Chr4g0390261 Rosa chinensis HOM05D002720 ORTHO05D002901 1.1e-07 59.3 59 45.8
CDE09G0699 Ceratophyllum demersum HOM05D002720 ORTHO05D002901 1.5e-07 58.9 58 43.1
Nitab4.5_0000695g0070 Nicotiana tabacum HOM05D002720 ORTHO05D002901 1.5e-07 58.9 59 50.8
AT3G22900 Arabidopsis thaliana HOM05D002720 ORTHO05D002901 2.6e-07 58.2 59 42.4
HanXRQChr03g0092471 Helianthus annuus HOM05D002720 ORTHO05D002901 2.6e-07 58.2 60 48.3
unitig_899.g14887 Utricularia gibba HOM05D002720 ORTHO05D002901 2.6e-07 58.2 59 47.5
Aqoxy3G01073 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 3.3e-07 57.8 59 42.4
AL3G37250 Arabidopsis lyrata HOM05D002720 ORTHO05D002901 3.3e-07 57.8 59 42.4
CiPaw.12G002900 Carya illinoinensis HOM05D002720 ORTHO05D002901 3.3e-07 57.8 58 44.8
Os05g0224700 Oryza sativa ssp. japonica HOM05D002720 ORTHO05D002901 3.3e-07 57.8 59 42.4
QL06p015591 Quercus lobata HOM05D002720 ORTHO05D002901 3.3e-07 57.8 62 51.6
Lsat_1_v5_gn_3_125620 Lactuca sativa HOM05D002720 ORTHO05D002901 4.4e-07 57.4 60 48.3
Nn3g19523 Nelumbo nucifera HOM05D002720 ORTHO05D002901 5.7e-07 57.0 56 42.9
Aqoxy5G00329 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 9.7e-07 56.2 59 42.4
MD13G1206600 Malus domestica HOM05D002720 ORTHO05D002901 9.7e-07 56.2 62 41.9
Prupe.1G030200 Prunus persica HOM05D002720 ORTHO05D002901 9.7e-07 56.2 61 42.6
SEGI_25384 Sequoiadendron giganteum HOM05D002720 ORTHO05D002901 9.7e-07 56.2 58 41.4
ECA240G3546 Erigeron canadensis HOM05D002720 ORTHO05D002901 1.3e-06 55.8 60 48.3
BcaC09g49218 Brassica carinata HOM05D002720 ORTHO05D002901 1.7e-06 55.5 59 44.1
CARHR098840 Cardamine hirsuta HOM05D002720 ORTHO05D002901 2.2e-06 55.1 59 40.7
Solyc06g033900.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 2.2e-06 55.1 58 44.8
Eucgr.H03167 Eucalyptus grandis HOM05D002720 ORTHO05D002901 3.7e-06 54.3 62 43.5
Solyc06g033890.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 3.7e-06 54.3 58 41.4
Cfa018743 Carpinus fangiana HOM05D002720 ORTHO05D002901 4.8e-06 53.9 58 44.8
Haze_07193 Corylus avellana HOM05D002720 ORTHO05D002901 4.8e-06 53.9 58 44.8
MD16G1207800 Malus domestica HOM05D002720 ORTHO05D002901 4.8e-06 53.9 62 38.7
COL.COLO4_19737 Corchorus olitorius HOM05D003328 ORTHO05D003722 6.3e-06 53.5 59 42.4
FvH4_4g02560 Fragaria vesca HOM05D002720 ORTHO05D002901 6.3e-06 53.5 47 55.3
Actinidia04482 Actinidia chinensis HOM05D000264 ORTHO05D000152 8.2e-06 53.1 50 48.0


User provided reference genes

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