Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 8.6e-190 666.8 322 100.0
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 7.4e-117 424.5 350 64.6
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 2.2e-116 422.9 350 64.3
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 1.4e-115 420.2 350 64.0
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.4e-115 420.2 350 63.7
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.4e-115 419.5 350 63.4
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.4e-115 419.5 350 63.4
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 2.4e-115 419.5 341 64.8
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.1e-115 419.1 350 63.1
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.1e-115 419.1 350 63.7
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.1e-115 419.1 350 63.7
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 3.1e-115 419.1 350 63.4
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 4.1e-115 418.7 350 63.7
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 5.3e-115 418.3 350 63.4
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 5.3e-115 418.3 341 64.5
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 5.3e-115 418.3 353 63.2
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 6.9e-115 417.9 350 63.1
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 9.0e-115 417.5 350 63.4
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 2.0e-114 416.4 353 62.9
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 2.6e-114 416.0 353 62.6
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 3.4e-114 415.6 350 62.9
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.4e-114 415.6 350 63.1
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.4e-114 415.6 350 62.9
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 4.5e-114 415.2 353 62.6
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 4.5e-114 415.2 353 62.0
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 4.5e-114 415.2 350 62.6
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 4.5e-114 415.2 350 63.1
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 4.5e-114 415.2 350 62.9
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 5.9e-114 414.8 350 62.9
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 5.9e-114 414.8 353 61.8
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 7.7e-114 414.5 350 62.9
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 7.7e-114 414.5 350 62.6
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 7.7e-114 414.5 353 61.8
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 7.7e-114 414.5 350 63.1
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 1.0e-113 414.1 350 62.9
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.0e-113 414.1 350 63.4
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.0e-113 414.1 350 62.9
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.0e-113 414.1 353 62.3
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 1.0e-113 414.1 353 62.3
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.0e-113 414.1 350 62.9
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 1.3e-113 413.7 350 62.3
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.3e-113 413.7 350 62.6
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.3e-113 413.7 350 62.6
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.7e-113 413.3 373 60.1
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.7e-113 413.3 350 62.9
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 2.2e-113 412.9 350 62.3
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 2.2e-113 412.9 350 62.0
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.2e-113 412.9 350 62.9
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.2e-113 412.9 350 62.6
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 2.2e-113 412.9 350 62.0
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 3.8e-113 412.1 350 62.0
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 3.8e-113 412.1 353 61.2
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 3.8e-113 412.1 350 62.3
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 3.8e-113 412.1 350 62.6
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 3.8e-113 412.1 350 62.3
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 5.0e-113 411.8 350 62.3
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 6.5e-113 411.4 350 62.0
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 8.5e-113 411.0 350 61.7
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 8.5e-113 411.0 350 61.7
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 8.5e-113 411.0 350 62.3
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 8.5e-113 411.0 350 61.7
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 8.5e-113 411.0 350 61.7
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 8.5e-113 411.0 350 62.0
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 8.5e-113 411.0 350 61.7
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.1e-112 410.6 350 62.3
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 1.4e-112 410.2 350 62.3
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.4e-112 410.2 350 62.3
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 1.4e-112 410.2 350 62.6
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 1.9e-112 409.8 350 61.4
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.9e-112 409.8 350 61.4
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.9e-112 409.8 350 61.4
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 1.9e-112 409.8 350 61.4
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.9e-112 409.8 350 61.7
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.5e-112 409.5 350 62.3
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 3.2e-112 409.1 350 61.4
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 4.2e-112 408.7 350 62.3
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 4.2e-112 408.7 350 62.0
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.2e-112 408.7 350 62.0
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.2e-112 408.7 350 62.0
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 4.2e-112 408.7 350 61.1
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 7.2e-112 407.9 350 62.0
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 9.4e-112 407.5 350 61.4
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.2e-111 407.1 350 62.0
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.2e-111 407.1 350 62.0
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 1.2e-111 407.1 350 61.4
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.6e-111 406.8 350 61.4
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 1.6e-111 406.8 350 61.7
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.6e-111 406.8 350 62.0
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 2.1e-111 406.4 350 61.4
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 2.1e-111 406.4 350 62.0
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.6e-111 405.2 382 58.1
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 7.9e-111 404.4 350 61.1
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 7.9e-111 404.4 350 61.7
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.0e-110 404.1 350 61.7
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 2.3e-110 402.9 350 61.1
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 3.9e-110 402.1 350 60.3
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 5.1e-110 401.7 350 59.7
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 2.0e-109 399.8 351 61.3
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.3e-109 398.7 351 60.1
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.3e-109 398.7 351 60.1
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.3e-108 397.1 350 61.1
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.2e-106 390.6 350 58.6
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 8.5e-105 384.4 350 60.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 4.8e-100 368.6 338 58.9
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 2.4e-99 366.3 355 56.3
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.1e-96 357.5 312 62.8
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 2.1e-87 326.6 360 51.1
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-85 320.5 249 65.5
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.8e-84 315.5 231 70.6
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 7.2e-80 301.6 318 55.7
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.2e-79 300.8 298 55.0
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 6.1e-79 298.5 284 58.1
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.8e-78 297.0 290 56.6
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.2e-77 294.3 279 60.2
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.0e-77 293.5 266 59.8
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.9e-76 288.9 266 59.0
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.8e-75 287.0 288 55.6
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 7.3e-72 275.0 325 49.5
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.7e-71 272.3 237 61.6
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.4e-70 270.8 217 66.4
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.2e-63 245.4 291 49.1
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 9.8e-61 238.0 129 86.8
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.7e-60 237.3 129 86.0
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.1e-59 234.6 137 81.0
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.7e-58 229.9 114 92.1
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 2.3e-54 216.9 161 69.6
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 6.8e-54 215.3 158 70.3
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.8e-53 212.2 115 85.2
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 9.8e-53 211.5 117 86.3
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 5.1e-49 199.1 146 67.8
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.8e-47 193.4 177 59.3
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-37 161.4 94 80.9
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-28 131.3 172 43.6
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 8.4e-28 128.6 113 60.2
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.1e-27 128.3 111 61.3
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.9e-27 127.5 111 60.4
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.7e-26 123.6 58 96.6
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.5e-26 123.2 111 58.6
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-25 120.2 58 93.1
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 3.9e-25 119.8 57 94.7
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 2.7e-18 97.1 49 91.8
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-16 89.7 47 89.4
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 8.1e-15 85.5 42 90.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.8e-14 84.3 93 51.6
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-14 84.0 59 69.5


User provided reference genes

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