Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 4.2e-116 421.8 282 100.0
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 9.2e-55 218.0 277 53.1
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 4.6e-46 189.1 152 75.0
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 6.6e-45 185.3 152 76.3
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 4.7e-43 179.1 152 74.3
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 8.1e-43 178.3 152 71.1
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 2.4e-42 176.8 152 73.7
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 2.4e-42 176.8 152 73.7
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 2.4e-42 176.8 152 73.7
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 3.1e-42 176.4 152 65.1
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 1.2e-41 174.5 152 71.1
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 2.0e-41 173.7 152 70.4
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 2.6e-41 173.3 152 71.1
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 3.4e-41 172.9 152 71.1
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 7.6e-41 171.8 152 69.1
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 9.9e-41 171.4 152 70.4
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 8.4e-40 168.3 152 73.0
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 8.4e-40 168.3 152 68.4
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 1.1e-39 167.9 152 69.1
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 1.1e-39 167.9 152 67.8
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 3.2e-39 166.4 151 66.9
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 4.2e-39 166.0 152 69.7
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 9.3e-39 164.9 152 69.7
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 1.3e-37 161.0 152 68.4
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 2.3e-37 160.2 152 62.5
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 3.0e-37 159.8 152 62.5
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 8.7e-37 158.3 150 70.7
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 1.9e-36 157.1 151 64.9
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 4.3e-36 156.0 152 67.1
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 7.3e-36 155.2 151 66.2
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 2.1e-35 153.7 152 67.1
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 3.6e-35 152.9 153 58.8
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 3.6e-35 152.9 153 51.6
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 6.2e-35 152.1 151 67.5
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 1.1e-34 151.4 152 69.1
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 1.4e-34 151.0 139 74.1
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 1.8e-34 150.6 153 57.5
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 1.8e-34 150.6 153 57.5
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 2.4e-34 150.2 152 64.5
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 3.1e-34 149.8 152 65.1
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 3.1e-34 149.8 152 70.4
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 3.1e-34 149.8 152 59.2
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 4.0e-34 149.4 153 50.3
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 5.3e-34 149.1 153 50.3
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 5.3e-34 149.1 152 65.1
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 6.9e-34 148.7 153 62.1
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 6.9e-34 148.7 152 68.4
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 9.0e-34 148.3 138 71.7
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 1.2e-33 147.9 153 50.3
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 1.5e-33 147.5 152 65.8
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 2.6e-33 146.7 153 64.1
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 2.6e-33 146.7 152 62.5
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 2.6e-33 146.7 152 65.1
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 1.3e-32 144.4 152 64.5
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 2.2e-32 143.7 152 46.7
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 3.8e-32 142.9 150 62.7
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 6.4e-32 142.1 152 60.5
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 6.4e-32 142.1 152 62.5
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 6.4e-32 142.1 153 64.1
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 6.4e-32 142.1 148 64.9
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 8.4e-32 141.7 152 63.8
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 8.4e-32 141.7 138 72.5
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 1.4e-31 141.0 139 64.7
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 9.3e-31 138.3 152 43.4
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 1.2e-30 137.9 152 46.7
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 1.2e-30 137.9 152 46.7
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 3.5e-30 136.3 138 69.6
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 1.3e-29 134.4 152 63.8
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 5.1e-29 132.5 139 68.3
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 5.1e-29 132.5 152 62.5
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 1.9e-28 130.6 144 61.1
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 1.9e-28 130.6 144 61.1
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 5.6e-28 129.0 139 64.7
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 5.6e-28 129.0 133 66.2
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 5.6e-28 129.0 152 62.5
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 7.4e-28 128.6 149 63.1
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 7.4e-28 128.6 138 68.8
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 1.3e-27 127.9 139 62.6
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 2.1e-27 127.1 139 65.5
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 2.1e-27 127.1 139 65.5
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 2.8e-27 126.7 141 60.3
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 3.1e-26 123.2 152 59.9
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 4.0e-26 122.9 152 60.5
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 8.4e-24 115.2 112 68.8
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 7.1e-23 112.1 152 56.6
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 6.0e-22 109.0 112 69.6
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 2.7e-14 83.6 61 60.7
Cpa.g.c31488 Carica papaya HOM05D007322 ORTHO05D009029 6.7e-13 79.0 217 25.3
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 3.7e-11 73.2 47 70.2
Sabra17G0065200 Salix brachista HOM05D007322 ORTHO05D009029 1.4e-10 71.2 83 51.8
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 2.2e-08 63.9 135 25.2
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 1.9e-07 60.8 133 24.8
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.6e-06 57.8 146 23.3
CiPaw.08G035000 Carya illinoinensis HOM05D003056 ORTHO05D003422 6.1e-06 55.8 133 23.3
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 7.9e-06 55.5 144 23.6


User provided reference genes

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