Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 1.7e-281 972.2 564 100.0
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 8.3e-172 607.8 498 71.1
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 4.2e-107 392.9 604 43.7
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 4.3e-104 382.9 609 41.9
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 7.1e-99 365.5 604 41.7
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 3.3e-96 356.7 597 40.2
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 3.4e-93 346.7 599 38.7
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 5.9e-93 345.9 597 38.5
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 5.9e-93 345.9 591 38.2
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 2.9e-92 343.6 596 38.6
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 1.9e-91 340.9 600 38.2
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 5.5e-91 339.3 594 39.2
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 9.4e-91 338.6 591 37.6
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 2.7e-90 337.0 593 37.8
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 7.9e-90 335.5 592 37.8
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 1.4e-89 334.7 320 55.3
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 3.9e-89 333.2 339 52.2
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 5.1e-89 332.8 598 38.1
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.1e-88 331.6 593 38.4
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 7.4e-88 328.9 596 38.4
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 9.7e-88 328.6 594 37.9
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 9.7e-88 328.6 594 43.1
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 8.2e-87 325.5 621 40.7
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 8.2e-87 325.5 592 38.3
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 1.1e-86 325.1 602 39.4
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 1.8e-86 324.3 597 36.2
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 6.9e-86 322.4 592 38.0
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 6.9e-86 322.4 591 36.4
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 6.9e-86 322.4 615 37.2
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 9.1e-86 322.0 592 36.7
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 3.4e-85 320.1 593 36.6
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 3.4e-85 320.1 592 40.7
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.7e-84 317.8 626 38.5
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 2.2e-84 317.4 319 52.0
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 2.2e-84 317.4 618 38.7
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.9e-84 317.0 593 36.3
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 3.2e-83 313.5 580 35.7
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 5.5e-83 312.8 599 36.1
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 5.5e-83 312.8 620 38.1
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 9.4e-83 312.0 591 35.0
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.6e-82 311.2 302 54.6
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 3.6e-82 310.1 198 70.2
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 1.0e-81 308.5 317 50.8
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.4e-81 308.1 600 36.0
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.0e-81 307.0 616 37.7
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.0e-80 304.3 601 34.9
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 3.3e-80 303.5 597 36.3
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 9.7e-80 302.0 650 40.9
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.2e-79 300.8 594 34.3
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.2e-79 300.8 307 51.5
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 1.4e-78 298.1 591 35.7
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 1.4e-78 298.1 245 58.4
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.4e-78 297.4 579 34.9
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 2.4e-78 297.4 596 34.9
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 2.4e-78 297.4 612 37.9
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 1.7e-76 291.2 591 34.2
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 3.8e-76 290.0 266 53.0
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.8e-76 290.0 241 56.0
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 5.0e-76 289.7 611 33.2
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 6.5e-76 289.3 241 56.0
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 1.4e-75 288.1 591 34.7
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 4.2e-75 286.6 319 48.6
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 9.4e-75 285.4 606 33.7
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 9.4e-75 285.4 599 34.4
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 8.0e-74 282.3 265 52.8
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 1.0e-73 282.0 594 35.5
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 2.3e-73 280.8 318 48.4
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 3.0e-73 280.4 321 48.3
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.2e-73 279.6 606 33.5
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 6.7e-73 279.3 587 33.7
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 8.8e-73 278.9 316 47.5
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 2.6e-72 277.3 606 34.3
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 7.4e-72 275.8 183 68.3
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 1.3e-71 275.0 580 36.9
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.2e-71 274.2 267 53.6
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.1e-70 271.9 319 47.3
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 2.4e-70 270.8 318 46.9
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 5.3e-70 269.6 289 49.8
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 9.1e-70 268.9 318 47.5
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 2.0e-69 267.7 319 45.5
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 2.6e-69 267.3 590 31.9
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.5e-69 266.9 597 33.7
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 4.5e-69 266.5 302 47.7
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 1.3e-68 265.0 605 33.9
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 2.9e-68 263.8 590 31.5
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 3.8e-68 263.5 561 33.5
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 5.0e-68 263.1 308 47.1
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 5.0e-68 263.1 317 42.9
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 8.5e-68 262.3 589 33.6
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 1.5e-67 261.5 318 45.6
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.2e-66 258.5 624 32.5
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 4.7e-66 256.5 591 31.5
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 8.0e-66 255.8 314 46.2
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 8.0e-66 255.8 589 35.0
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 1.8e-65 254.6 316 45.3
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 4.0e-65 253.4 598 32.4
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 5.2e-65 253.1 312 44.9
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 6.8e-65 252.7 592 33.1
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 8.8e-65 252.3 314 45.2
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.2e-64 251.9 599 33.2
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.2e-64 251.9 316 44.6
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 4.4e-64 250.0 314 45.9
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 2.4e-62 244.2 569 32.9
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 3.1e-62 243.8 343 42.9
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 7.0e-62 242.7 568 33.6
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 2.9e-60 237.3 617 33.2
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 4.2e-59 233.4 590 30.8
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 2.7e-58 230.7 178 59.0
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 4.7e-58 229.9 603 31.2
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 5.2e-57 226.5 276 44.9
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 4.8e-55 219.9 180 56.7
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.7e-52 211.5 248 48.0
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.1e-51 208.8 318 39.9
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 9.5e-51 205.7 528 32.4
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 1.6e-50 204.9 523 33.1
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 6.1e-50 203.0 284 41.2
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 2.0e-48 198.0 538 31.6
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 7.8e-45 186.0 491 33.4
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.5e-43 181.8 320 35.0
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.2e-42 178.7 184 47.8
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.8e-41 174.9 133 60.9
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 1.8e-41 174.9 317 33.4
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 8.3e-39 166.0 274 38.7
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.5e-35 155.2 182 41.2
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 3.3e-35 154.1 78 93.6
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 1.4e-33 148.7 242 41.3
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.5e-32 145.2 222 40.1
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 7.3e-27 126.3 489 27.0
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.4e-22 111.3 248 33.5
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 1.0e-20 105.9 502 25.5
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 3.9e-20 104.0 349 30.7
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 1.1e-17 95.9 375 27.7
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.2e-17 93.6 56 71.4
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 7.6e-16 89.7 338 29.6
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 2.9e-15 87.8 105 41.0
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 6.4e-15 86.7 70 55.7
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 8.4e-15 86.3 65 53.8
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 2.7e-13 81.3 67 47.8
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 6.0e-13 80.1 92 48.9
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.3e-12 79.0 369 26.8
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.0e-12 77.8 91 49.5
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 8.7e-12 76.3 76 53.9
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 9.6e-11 72.8 338 27.5
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.8e-10 70.5 81 46.9
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 9.0e-09 66.2 130 30.0
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 6.4e-07 60.1 144 36.1


User provided reference genes

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