Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 7.9e-154 547.4 337 100.0
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 2.3e-129 466.1 330 80.9
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 1.2e-128 463.8 330 83.0
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.0e-128 463.0 346 79.5
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 3.7e-127 458.8 348 81.6
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 3.7e-127 458.8 338 79.6
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.1e-126 457.2 351 77.8
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.1e-126 457.2 351 77.8
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.0e-126 454.5 342 81.0
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 9.1e-126 454.1 333 83.2
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 2.7e-125 452.6 332 80.7
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 3.5e-125 452.2 239 92.5
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 3.5e-125 452.2 239 92.5
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 4.5e-125 451.8 339 79.4
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.0e-124 450.7 305 87.9
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.3e-124 450.3 322 82.0
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.2e-124 449.5 239 92.5
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 5.0e-124 448.4 352 79.3
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 6.5e-124 448.0 239 91.6
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.1e-123 447.2 352 79.3
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 1.5e-123 446.8 239 91.6
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.9e-123 446.4 239 92.1
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.9e-123 446.4 239 92.1
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 1.9e-123 446.4 239 91.6
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 1.9e-123 446.4 240 90.4
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 3.2e-123 445.7 240 90.4
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 3.2e-123 445.7 337 83.7
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 5.5e-123 444.9 239 91.2
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 7.2e-123 444.5 337 77.2
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 9.4e-123 444.1 341 80.1
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 1.6e-122 443.4 239 90.4
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 2.7e-122 442.6 239 90.8
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 3.6e-122 442.2 338 79.3
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 3.6e-122 442.2 241 90.5
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 4.7e-122 441.8 239 90.8
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 6.1e-122 441.4 344 74.4
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.0e-121 440.7 239 90.4
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.8e-121 439.9 239 90.0
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 1.8e-121 439.9 239 90.4
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 1.8e-121 439.9 239 91.6
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 2.3e-121 439.5 323 82.0
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 2.3e-121 439.5 239 90.4
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 2.3e-121 439.5 338 81.1
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 3.0e-121 439.1 331 78.2
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 5.2e-121 438.3 239 90.0
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 5.2e-121 438.3 338 80.8
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 5.2e-121 438.3 342 77.2
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 5.2e-121 438.3 239 90.0
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 6.8e-121 438.0 239 90.0
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 8.8e-121 437.6 237 90.3
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.0e-120 436.4 345 79.1
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 2.0e-120 436.4 345 79.1
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 2.0e-120 436.4 235 91.9
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 4.4e-120 435.3 359 76.6
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 4.4e-120 435.3 346 81.2
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 5.7e-120 434.9 360 77.5
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 7.5e-120 434.5 346 77.2
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 1.3e-119 433.7 234 90.2
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.7e-119 433.3 345 78.8
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 6.3e-119 431.4 220 94.5
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 2.4e-118 429.5 242 89.7
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 2.4e-118 429.5 242 89.7
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 3.1e-118 429.1 347 80.4
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 7.0e-118 427.9 334 80.8
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 7.0e-118 427.9 219 94.1
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 9.1e-118 427.6 241 88.0
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 3.5e-117 425.6 231 90.9
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 5.9e-117 424.9 221 92.8
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.0e-116 424.1 220 93.6
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 1.0e-116 424.1 326 77.9
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 1.7e-116 423.3 357 78.7
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.9e-116 422.5 241 87.1
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 5.0e-116 421.8 241 86.7
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.9e-115 419.9 227 89.0
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 3.3e-115 419.1 220 91.8
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 7.2e-115 417.9 238 85.3
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 1.2e-114 417.2 220 90.9
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 1.6e-114 416.8 221 91.0
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 1.6e-114 416.8 344 77.0
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 2.8e-114 416.0 344 76.7
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 6.1e-114 414.8 220 89.5
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 4.0e-113 412.1 321 76.9
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 7.5e-112 407.9 230 86.1
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 1.7e-111 406.8 234 84.2
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 1.7e-111 406.8 235 83.8
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 2.9e-111 406.0 234 84.2
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.1e-110 404.1 417 62.8
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.8e-110 403.3 241 82.6
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 7.0e-110 401.4 411 61.1
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 1.2e-109 400.6 220 86.8
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 1.2e-109 400.6 220 86.8
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.6e-109 400.2 220 86.4
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.6e-109 400.2 220 86.4
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 2.0e-109 399.8 220 87.3
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 3.5e-109 399.1 232 84.5
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 7.8e-109 397.9 232 84.1
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.0e-108 397.5 231 85.3
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 3.3e-107 392.5 237 82.3
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 4.7e-106 388.7 235 80.9
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 3.1e-105 386.0 223 85.2
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 8.9e-105 384.4 235 80.0
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 1.2e-104 384.0 208 91.8
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 1.4e-102 377.1 241 78.4
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.1e-99 367.5 238 77.3
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 1.7e-95 353.6 195 88.2
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 2.4e-94 349.7 240 73.8
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.4e-89 334.0 181 90.6
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 2.3e-89 333.2 342 55.0
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.4e-86 323.2 224 74.6
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 5.4e-86 322.0 234 68.8
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 3.5e-85 319.3 208 74.0
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 5.6e-83 312.0 175 87.4
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 1.4e-81 307.4 567 38.3
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 2.0e-80 303.5 348 62.6
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 6.0e-77 292.0 218 65.6
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 2.3e-76 290.0 175 84.6
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.9e-75 287.0 247 65.6
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 6.2e-74 282.0 213 69.5
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.2e-72 277.7 189 72.0
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 2.1e-69 266.9 150 88.0
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 1.7e-63 247.3 132 91.7
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 4.9e-63 245.7 234 74.8
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.6e-58 230.7 220 56.8
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 8.4e-55 218.4 187 63.1
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 4.2e-54 216.1 232 71.6
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 7.9e-53 211.8 107 96.3
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 3.0e-52 209.9 107 96.3
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.9e-52 209.5 108 95.4
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 1.1e-51 208.0 135 78.5
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 5.7e-51 205.7 108 88.9
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.9e-49 198.7 217 69.1
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.2e-48 198.0 106 88.7
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.4e-48 196.4 107 88.8
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.5e-48 196.1 107 91.6
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 2.3e-44 183.7 92 95.7
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 5.1e-44 182.6 108 81.5
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 3.7e-42 176.4 95 91.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 3.1e-41 173.3 95 90.5
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 6.9e-41 172.2 199 64.8
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.4e-40 169.9 88 88.6
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.8e-39 166.4 134 66.4
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 1.2e-32 144.8 83 80.7
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 2.0e-32 144.1 71 95.8
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 2.0e-32 144.1 71 95.8
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.9e-23 113.6 90 68.9
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 1.9e-22 110.9 58 91.4
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 3.3e-19 100.1 128 53.1
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 7.5e-19 99.0 168 62.5
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 3.4e-11 73.6 160 63.1
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 5.7e-11 72.8 103 48.5
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 3.7e-10 70.1 147 54.4
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 4.8e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.3e-10 68.9 38 86.8
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 1.1e-09 68.6 139 62.6
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.0e-07 59.7 45 64.4
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 1.1e-06 58.5 37 81.1


User provided reference genes

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