Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013704 Daucus carota HOM05D003499 ORTHO05D004754 0.0e+00 3297.7 2014 100.0
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 0.0e+00 1633.2 2111 56.0
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 0.0e+00 1568.5 2121 51.5
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 0.0e+00 1533.5 2116 53.1
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 0.0e+00 1522.7 2136 48.8
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1518.4 2115 48.8
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 0.0e+00 1503.8 2154 48.2
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 0.0e+00 1479.9 2123 49.4
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 0.0e+00 1479.2 2143 49.1
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 0.0e+00 1467.6 2121 47.5
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 0.0e+00 1465.3 2123 47.4
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 0.0e+00 1461.4 2131 46.8
Cfa017771 Carpinus fangiana HOM05D003499 ORTHO05D004754 0.0e+00 1459.1 2075 50.6
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 0.0e+00 1446.4 2124 48.5
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 0.0e+00 1426.8 2105 47.3
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 0.0e+00 1420.6 2138 47.0
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 0.0e+00 1420.2 2113 48.3
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 0.0e+00 1417.1 2107 46.4
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 0.0e+00 1416.7 2114 47.5
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 0.0e+00 1411.4 2074 46.5
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 0.0e+00 1409.8 2116 45.9
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 0.0e+00 1406.7 2095 47.9
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 0.0e+00 1404.8 2103 45.6
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 0.0e+00 1403.3 2102 45.3
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 0.0e+00 1401.7 2107 45.1
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 0.0e+00 1401.3 2098 45.1
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 0.0e+00 1401.0 2112 46.6
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 0.0e+00 1378.6 2097 47.5
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1377.5 2129 45.9
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 0.0e+00 1377.5 2103 46.8
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 0.0e+00 1375.9 2103 47.1
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 0.0e+00 1370.5 2102 45.9
Nitab4.5_0005627g0040 Nicotiana tabacum HOM05D003499 ORTHO05D004754 0.0e+00 1360.1 2068 46.4
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 0.0e+00 1350.1 2111 45.6
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 0.0e+00 1349.3 2314 42.7
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 0.0e+00 1344.7 2095 44.0
Peaxi162Scf00579g00316 Petunia axillaris HOM05D003499 ORTHO05D004754 0.0e+00 1338.9 2075 45.8
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1336.2 2148 45.3
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 0.0e+00 1328.9 2156 47.4
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 0.0e+00 1314.3 2104 45.2
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 0.0e+00 1310.8 2106 44.9
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 0.0e+00 1305.0 2124 43.6
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1304.7 2040 45.0
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 0.0e+00 1303.1 2141 44.4
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 0.0e+00 1298.1 2142 44.5
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 0.0e+00 1292.7 2097 43.7
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 0.0e+00 1292.3 2097 44.7
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 0.0e+00 1288.9 2083 43.0
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 0.0e+00 1282.7 2080 44.1
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1282.7 2153 44.5
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 0.0e+00 1277.3 2104 45.2
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 0.0e+00 1259.6 2112 43.8
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1248.0 2135 46.6
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 0.0e+00 1246.5 2383 41.8
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 0.0e+00 1245.3 2091 42.0
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 0.0e+00 1245.0 2129 42.7
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 0.0e+00 1242.6 2154 46.0
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 0.0e+00 1240.3 2135 43.0
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 0.0e+00 1239.9 2123 45.5
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 0.0e+00 1238.8 2132 46.6
TAR626G0290 Trochodendron aralioides HOM05D003499 ORTHO05D004754 0.0e+00 1231.5 1852 47.5
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 0.0e+00 1229.5 2125 44.0
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 0.0e+00 1228.8 2105 41.6
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 0.0e+00 1203.7 2146 42.3
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 0.0e+00 1200.3 2083 44.8
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 0.0e+00 1192.6 2032 45.0
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 0.0e+00 1186.4 2108 43.9
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 0.0e+00 1182.5 2131 43.5
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 0.0e+00 1173.3 2107 43.4
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 0.0e+00 1172.5 2116 42.3
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 0.0e+00 1172.5 2035 42.4
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 0.0e+00 1166.4 2194 43.0
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 0.0e+00 1149.4 2156 42.2
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 0.0e+00 1141.7 2137 41.0
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 0.0e+00 1138.6 2148 43.4
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1124.0 2132 41.7
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1113.6 2440 38.7
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1103.6 2151 41.5
PSO675G8338 Papaver somniferum HOM05D003499 ORTHO05D004754 0.0e+00 1100.5 2035 40.3
AT1G79280 Arabidopsis thaliana HOM05D003499 ORTHO05D004754 0.0e+00 1098.2 1862 43.4
MELO3C012583.2 Cucumis melo HOM05D003499 ORTHO05D004754 0.0e+00 1096.6 1861 44.1
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 5.2e-309 1065.4 1933 40.9
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 1.8e-306 1057.0 2184 40.1
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 6.5e-304 1048.5 2146 40.2
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 6.5e-304 1048.5 2146 41.3
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 7.5e-300 1035.0 1875 42.0
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 3.7e-299 1032.7 2171 40.1
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 7.0e-298 1028.5 2138 39.7
PSO541G3284 Papaver somniferum HOM05D003499 ORTHO05D004754 7.7e-297 1025.0 2169 37.7
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 1.0e-296 1024.6 2162 39.4
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 9.2e-290 1001.5 2144 38.9
unitig_578.g16338 Utricularia gibba HOM05D003499 ORTHO05D004754 3.3e-287 993.0 2105 38.5
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 5.8e-276 955.7 2141 39.0
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 1.7e-272 944.1 2137 38.0
Hma1.2p1_0151F.1_g066930 Hydrangea macrophylla HOM05D003499 ORTHO05D004754 2.0e-268 930.6 927 60.4
HanXRQChr08g0213121 Helianthus annuus HOM05D003499 ORTHO05D004754 3.5e-249 866.7 1977 36.7
Os02g0741500 Oryza sativa ssp. japonica HOM05D003499 ORTHO05D004754 4.6e-249 866.3 2140 37.1
Zm00001eb194730 Zea mays HOM05D003499 ORTHO05D004754 4.3e-247 859.8 2153 38.0
MBI02_g17882_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.1e-241 840.9 936 53.5
Pp3c8_8020 Physcomitrium patens HOM05D003499 ORTHO05D004754 5.6e-239 832.8 1320 40.8
Oeu025989.1 Olea europaea HOM05D003499 ORTHO05D004754 3.3e-231 807.0 1397 44.0
Haze_18466 Corylus avellana HOM05D003499 ORTHO05D004754 4.3e-231 806.6 2076 36.7
AagrBONN_evm.TU.Sc2ySwM_344.3653 Anthoceros agrestis HOM05D003499 ORTHO05D004754 1.8e-229 801.2 1309 40.2
Mapoly0042s0082 Marchantia polymorpha HOM05D003499 ORTHO05D004754 3.8e-227 793.5 1329 39.8
HPP92_017349 Vanilla planifolia HOM05D003499 ORTHO05D004754 3.3e-215 753.8 1087 45.6
AL2G39750 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 5.3e-213 746.5 926 49.2
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 1.9e-194 684.9 2038 32.1
Solyc06g053570.2 Solanum lycopersicum HOM05D003499 ORTHO05D004754 8.8e-192 676.0 796 51.1
HPP92_017337 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.2e-183 649.0 1028 42.2
SMO203G0250 Selaginella moellendorffii HOM05D003499 ORTHO05D004754 3.7e-182 644.0 2153 31.0
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 2.0e-180 638.3 1386 38.9
SEGI_36052 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 2.0e-175 621.7 842 45.7
Ca_03377_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 3.4e-175 620.9 665 53.8
vmacro21306 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 6.6e-163 580.1 792 48.4
MD10G1218800 Malus domestica HOM05D003499 ORTHO05D004754 1.1e-162 579.3 678 53.4
SEGI_41216 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 1.1e-162 579.3 795 45.7
Sabra16G0005400 Salix brachista HOM05D000228 ORTHO05D001122 9.8e-159 566.2 802 48.4
MD10G1218600 Malus domestica HOM05D003499 ORTHO05D004754 1.3e-142 512.7 521 55.7
CBR_g33916 Chara braunii HOM05D003499 ORTHO05D004754 1.3e-121 443.0 914 35.4
Sabra11G0075400 Salix brachista HOM05D000228 ORTHO05D001122 4.2e-93 348.2 661 39.8
vmacro21307 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 5.3e-88 331.3 413 50.1
Lj2C7G1 Lonicera japonica HOM05D003499 ORTHO05D004754 7.2e-85 320.9 250 67.2
Mapoly2166s0001 Marchantia polymorpha HOM05D003499 ORTHO05D004754 1.4e-75 290.0 479 41.3
Sabra16G0132400 Salix brachista HOM05D000228 ORTHO05D001122 6.3e-73 281.2 490 42.4
SEGI_27786 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 3.8e-70 271.9 338 48.5
Haze_18469 Corylus avellana HOM05D003499 ORTHO05D004754 1.9e-69 269.6 237 60.8
Solyc06g053590.4 Solanum lycopersicum HOM05D003499 ORTHO05D004754 4.2e-69 268.5 658 38.6
Lj2A6T29 Lonicera japonica HOM05D003499 ORTHO05D004754 3.6e-60 238.8 688 35.5
Sabra19G0031300 Salix brachista HOM05D000228 ORTHO05D001122 4.7e-60 238.4 356 47.8
SalBow6G0003 Salvia bowleyana HOM05D003499 ORTHO05D004754 4.6e-55 221.9 185 64.9
SalBow6G2443 Salvia bowleyana HOM05D003499 ORTHO05D004754 6.0e-55 221.5 185 64.9
SalBow6G6137 Salvia bowleyana HOM05D003136 ORTHO05D003562 6.0e-55 221.5 185 64.9
AUR62044736 Chenopodium quinoa HOM05D003499 ORTHO05D004754 8.0e-52 211.1 412 37.1
HPP92_017338 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.4e-51 210.3 258 49.2
Haze_18467 Corylus avellana HOM05D003499 ORTHO05D004754 1.5e-50 206.8 186 59.7
Sabra19G0031200 Salix brachista HOM05D000228 ORTHO05D001122 1.5e-50 206.8 402 38.8
PRCOL_00003349 Prasinoderma coloniale HOM05D003499 ORTHO05D004754 3.4e-50 205.7 1338 23.9
MBI18_g33844_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 4.6e-47 195.3 153 64.1
MCO03G110 Micromonas commoda HOM05D003499 ORTHO05D004754 1.3e-46 193.7 1325 21.7
MBI02_g17883_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.6e-44 186.8 591 39.8
HanXRQChr11g0329221 Helianthus annuus HOM05D003499 ORTHO05D004754 1.4e-43 183.7 168 59.5
SHI33381 Sapria himalayana HOM05D003499 ORTHO05D004754 5.8e-42 178.3 291 39.9
MELO3C000424.2 Cucumis melo HOM05D003499 ORTHO05D004754 2.5e-37 162.9 182 53.3
AL2G39760 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 2.8e-36 159.5 192 49.0
CBR_g33917 Chara braunii HOM05D003499 ORTHO05D004754 4.4e-34 152.1 296 35.1
CDE05G0263 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 1.1e-29 137.5 111 58.6
MBI12_g17629_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 3.6e-28 132.5 135 56.3
MBI07_g23017_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 5.8e-26 125.2 158 49.4
Rhsim02G0129800 Rhododendron simsii HOM05D003499 ORTHO05D004754 5.8e-26 125.2 238 39.1
Cpa.g.sc569.2 Carica papaya HOM05D003499 ORTHO05D004754 4.2e-24 119.0 196 44.9
SHI33383 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-21 110.9 151 48.3
MBI18_g27146_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.3e-20 107.5 191 39.8
Sc21g0005210 Simmondsia chinensis HOM05D003499 ORTHO05D004754 3.6e-20 105.9 103 51.5
Cpa.g.c39206 Carica papaya HOM05D003499 ORTHO05D004754 8.1e-20 104.8 82 72.0
MBI17_g19041_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 7.6e-18 98.2 95 58.9
Sabra16G0132500 Salix brachista HOM05D000228 ORTHO05D001122 4.9e-17 95.5 115 51.3
MBI03_g24553_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.4e-16 94.0 95 56.8
MBI14_g41599_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.4e-16 93.2 95 54.7
Sc15g0004610 Simmondsia chinensis HOM05D000219 ORTHO05D000226 5.4e-16 92.0 84 53.6
Cpa.g.sc2332.1 Carica papaya HOM05D003499 ORTHO05D004754 2.1e-15 90.1 393 31.6
SGA_v2.0_scaffold167G38468 Striga asiatica HOM05D003499 ORTHO05D004754 1.3e-14 87.4 64 68.8
AUR62018106 Chenopodium quinoa HOM05D003499 ORTHO05D004754 1.8e-14 87.0 427 30.4
Rhsim03G0230300 Rhododendron simsii HOM05D000285 ORTHO05D004754 1.8e-14 87.0 236 32.6
MBI10_g08630_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 5.1e-14 85.5 129 45.7
arahy.Tifrunner.gnm1.ann1.M9UA6E Arachis hypogaea HOM05D026678 ORTHO05D004754 2.5e-13 83.2 87 51.7
Medtr2g450170 Medicago truncatula HOM05D003499 ORTHO05D004754 4.3e-13 82.4 119 45.4
MBI10_g16742_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.3e-12 80.9 112 46.4
Rhsim12G0215500 Rhododendron simsii HOM05D003499 ORTHO05D004754 2.1e-12 80.1 231 35.9
SalBow6G3979 Salvia bowleyana HOM05D003499 ORTHO05D004754 1.1e-11 77.8 74 56.8
Cpa.g.c34987 Carica papaya HOM05D003499 ORTHO05D004754 2.4e-11 76.6 55 69.1
MBI16_g34347_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.4e-11 76.6 99 47.5
HPP92_017348 Vanilla planifolia HOM05D003499 ORTHO05D004754 3.1e-11 76.3 580 27.1
MBI18_g13000_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.6e-10 73.2 149 36.9
AL8G20460 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.9e-08 67.0 124 37.9
MBI02_g18804_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.4e-08 66.6 100 46.0
MBI02_g41948_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 9.3e-08 64.7 51 70.6
Phvul.011G179600 Phaseolus vulgaris HOM05D003499 ORTHO05D011720 8.7e-06 58.2 169 30.2


User provided reference genes

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