Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 7.3e-234 813.5 417 100.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 5.5e-197 691.0 415 85.1
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 7.9e-196 687.2 415 83.6
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 8.8e-195 683.7 415 84.1
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 4.3e-194 681.4 415 84.1
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 4.3e-194 681.4 411 85.4
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.3e-194 681.4 412 85.0
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.7e-193 679.5 415 84.1
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.7e-193 678.3 413 83.8
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 4.1e-192 674.9 415 84.1
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 9.1e-192 673.7 415 82.9
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 9.1e-192 673.7 446 78.9
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.2e-191 673.3 415 82.7
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 2.0e-191 672.5 415 81.9
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-191 672.5 417 83.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 3.4e-191 671.8 411 83.5
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 7.7e-191 670.6 415 83.1
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.3e-190 669.8 415 81.9
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.3e-190 669.8 413 83.1
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.7e-190 669.5 417 83.7
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 3.8e-190 668.3 415 81.4
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 8.5e-190 667.2 415 82.2
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 8.5e-190 667.2 415 81.4
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.4e-189 666.4 415 81.7
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 3.2e-189 665.2 412 83.5
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.2e-189 664.8 414 82.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 4.2e-189 664.8 415 81.7
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 5.5e-189 664.5 415 81.2
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 7.2e-189 664.1 415 81.4
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 7.2e-189 664.1 415 82.2
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.6e-188 662.9 415 81.9
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.1e-188 662.5 415 81.4
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.1e-188 662.5 413 82.3
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.7e-188 662.1 417 81.3
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.7e-188 662.1 415 81.7
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.6e-188 661.8 414 81.9
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 3.6e-188 661.8 417 81.1
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 3.6e-188 661.8 415 81.7
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-187 659.8 417 81.1
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.0e-187 658.7 417 81.1
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 3.9e-187 658.3 419 80.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 6.7e-187 657.5 415 80.2
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 6.7e-187 657.5 415 80.2
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.1e-186 656.8 414 80.2
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.0e-186 656.0 415 80.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.3e-185 653.3 415 80.5
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.7e-185 652.9 415 80.7
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 3.7e-185 651.7 415 80.0
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 4.8e-185 651.4 414 80.4
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 6.3e-185 651.0 415 79.5
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 8.2e-185 650.6 415 80.0
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 8.2e-185 650.6 418 80.4
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 8.2e-185 650.6 415 79.8
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-184 650.2 415 79.5
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-184 649.8 415 79.5
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.4e-184 649.8 415 79.5
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.4e-184 649.0 415 79.8
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.4e-184 649.0 418 78.9
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 7.0e-184 647.5 417 78.2
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 9.1e-184 647.1 415 79.5
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.2e-183 646.7 415 79.3
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 4.5e-183 644.8 415 79.0
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 7.7e-183 644.0 415 79.0
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 7.7e-183 644.0 417 77.7
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.0e-182 643.7 416 78.4
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.3e-182 643.3 411 79.1
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 2.2e-182 642.5 414 79.2
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.9e-182 642.1 415 78.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.5e-181 639.8 411 79.6
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.5e-181 639.0 415 78.1
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 4.2e-181 638.3 415 78.3
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 5.5e-181 637.9 415 78.1
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.2e-180 636.7 438 76.0
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 8.0e-180 634.0 427 76.8
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.0e-179 633.6 427 77.0
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.0e-179 633.6 427 77.0
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.8e-179 632.9 421 77.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 6.7e-179 630.9 425 75.8
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 9.7e-178 627.1 416 78.1
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.7e-177 626.3 415 77.1
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 4.1e-176 621.7 410 78.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.0e-175 619.4 431 74.5
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.7e-174 616.3 414 76.3
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.2e-173 611.7 418 74.2
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 2.1e-172 609.4 415 76.9
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 3.6e-172 608.6 416 74.8
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 4.7e-172 608.2 416 74.5
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-170 603.6 417 75.5
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.6e-170 602.4 415 71.3
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.5e-167 591.7 372 81.2
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.0e-166 590.5 376 80.1
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 9.5e-165 583.9 407 75.2
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.6e-162 575.9 411 70.1
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 4.4e-162 575.1 412 73.3
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 9.2e-160 567.4 323 88.9
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.2e-159 567.0 371 78.7
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 7.5e-154 547.7 419 69.5
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.4e-152 542.7 415 68.7
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 2.7e-151 539.3 413 69.2
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 4.6e-151 538.5 405 67.2
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 8.6e-150 534.3 411 69.6
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.4e-147 526.9 485 61.6
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 9.2e-144 514.2 405 64.7
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.9e-141 506.5 414 62.3
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 5.2e-139 498.4 407 60.7
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.2e-137 493.0 281 87.9
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.3e-137 491.1 281 87.5
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 3.6e-132 475.7 297 81.1
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.4e-131 473.8 304 78.3
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.6e-130 469.5 257 92.2
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 9.3e-120 434.5 256 82.8
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 5.3e-115 418.7 314 68.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.3e-110 403.3 288 70.8
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 8.1e-108 394.8 314 66.6
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-101 373.6 301 68.4
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 4.5e-98 362.5 284 65.8
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.7e-97 360.5 336 53.6
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 7.9e-87 325.1 191 86.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.4e-83 314.3 200 76.5
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-77 294.7 238 64.7
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 8.5e-73 278.5 186 74.7
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.2e-72 276.6 173 79.8
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-71 273.9 199 69.3
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.5e-66 256.5 204 67.6
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 8.5e-65 251.9 320 42.8
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.5e-58 229.6 131 89.3
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.5e-56 224.6 403 34.7
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.5e-56 224.6 323 37.2
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.4e-51 208.0 221 52.5
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.6e-49 198.7 126 77.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 4.0e-46 189.9 115 75.7
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-45 188.0 196 55.6
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 6.6e-41 172.6 102 77.5
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.0e-39 165.6 177 55.4
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.6e-37 160.6 160 58.1
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.2e-34 151.8 414 31.2
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.7e-34 150.6 83 83.1
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.9e-32 144.4 80 85.0
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.0e-29 134.4 115 61.7
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.6e-26 123.2 105 56.2
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 6.0e-26 122.9 117 60.7
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.6e-18 98.2 51 92.2
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 7.8e-18 95.9 101 56.4
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 2.3e-17 94.4 153 39.2
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 4.3e-16 90.1 114 52.6
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.6e-15 88.2 143 44.1
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 6.8e-14 82.8 146 43.2
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.5e-13 81.6 59 79.7
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.4e-12 76.3 50 74.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.1e-10 71.2 55 65.5
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 3.9e-09 67.0 40 82.5
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 8.7e-09 65.9 81 45.7
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-06 58.9 65 56.9
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.1e-06 57.4 50 62.0


User provided reference genes

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