Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 0.0e+00 1549.6 797 100.0
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1121.7 817 68.8
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1099.7 813 68.0
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 0.0e+00 1091.6 811 68.2
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 7.8e-309 1063.5 810 66.5
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.7e-308 1062.4 812 67.0
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.6e-306 1055.8 812 66.9
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 1.8e-305 1052.4 812 66.6
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 2.0e-304 1048.9 814 65.2
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 3.4e-304 1048.1 802 65.8
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 9.8e-304 1046.6 808 65.7
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.1e-302 1043.1 805 64.5
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.1e-302 1043.1 803 65.5
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 9.2e-302 1040.0 727 72.1
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 9.2e-302 1040.0 809 65.9
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 4.3e-299 1031.2 809 65.0
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 7.3e-299 1030.4 807 65.6
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.4e-297 1026.2 826 63.7
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 2.3e-297 1025.4 807 64.3
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 2.0e-296 1022.3 806 64.4
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 2.6e-296 1021.9 789 65.4
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 5.8e-296 1020.8 806 64.8
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 3.7e-295 1018.1 819 62.8
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 3.7e-295 1018.1 828 63.2
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 8.3e-295 1016.9 817 65.7
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 9.2e-294 1013.4 812 64.4
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.6e-293 1012.7 800 64.8
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 2.1e-293 1012.3 811 64.1
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 2.7e-293 1011.9 807 64.4
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.0e-293 1010.7 800 64.6
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 2.5e-291 1005.4 825 63.5
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 7.3e-291 1003.8 807 63.4
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.2e-290 1003.0 812 63.8
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 2.1e-290 1002.3 804 64.2
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-290 1001.9 800 64.2
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 4.7e-290 1001.1 803 63.5
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 5.2e-289 997.7 805 63.7
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 5.2e-289 997.7 808 62.4
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 4.4e-288 994.6 812 61.6
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.4e-286 989.6 819 64.5
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 7.1e-286 987.3 816 61.8
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 1.3e-284 983.0 795 61.3
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.5e-283 979.5 825 59.9
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 2.5e-283 978.8 816 60.5
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 7.3e-283 977.2 813 61.7
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 3.6e-282 974.9 827 60.8
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 5.3e-281 971.1 800 62.5
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.0e-280 969.1 726 67.9
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 1.4e-278 963.0 806 61.8
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 2.4e-278 962.2 806 62.0
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 4.6e-277 958.0 781 62.4
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 6.0e-277 957.6 809 60.1
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 3.0e-276 955.3 796 61.3
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 6.6e-276 954.1 813 59.5
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.6e-274 948.3 812 61.7
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 8.1e-274 947.2 750 62.0
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.3e-273 944.5 806 61.2
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 5.3e-273 944.5 795 61.1
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 1.5e-272 943.0 795 61.0
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 2.0e-272 942.6 796 60.4
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 4.5e-272 941.4 872 57.1
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 7.1e-270 934.1 798 60.8
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.2e-269 933.3 818 58.8
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 4.6e-269 931.4 819 58.9
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 3.0e-268 928.7 820 61.3
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.5e-267 926.4 811 58.0
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 1.6e-266 922.9 780 60.6
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.8e-265 919.5 785 59.7
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.1e-262 910.2 817 60.1
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 3.2e-262 908.7 813 58.4
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 9.3e-262 907.1 809 58.7
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 5.1e-260 901.4 810 57.3
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 1.3e-258 896.7 810 56.8
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 3.7e-258 895.2 812 57.5
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 3.7e-258 895.2 810 58.4
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 2.0e-256 889.4 812 56.8
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 5.8e-256 887.9 809 55.6
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.3e-255 886.7 809 55.9
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 4.6e-253 878.2 810 56.3
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.0e-252 875.5 848 57.1
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 3.9e-252 875.2 838 55.3
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 6.5e-247 857.8 722 59.1
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 3.2e-246 855.5 920 51.3
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 2.3e-244 849.4 806 56.8
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 1.3e-242 843.6 822 54.7
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 1.4e-241 840.1 809 55.3
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 8.2e-234 814.3 588 69.9
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 1.3e-226 790.4 606 65.3
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-225 787.3 617 66.0
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-225 787.3 617 66.0
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-218 762.7 623 64.2
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 2.4e-217 759.6 782 53.3
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 4.7e-213 745.3 616 61.9
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 3.6e-197 692.6 623 58.4
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 3.7e-194 682.6 791 47.5
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 9.5e-190 667.9 717 49.2
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 1.9e-182 643.7 768 45.6
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 6.0e-176 622.1 809 43.1
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 2.8e-173 613.2 721 46.3
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 2.7e-160 570.1 405 69.4
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 3.9e-159 566.2 547 56.3
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.5e-158 563.5 491 61.3
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 4.2e-153 546.2 466 58.6
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 3.9e-151 539.7 395 71.1
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 5.3e-140 502.7 546 48.2
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 2.9e-130 470.3 456 54.8
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-127 461.5 394 62.4
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.4e-126 455.7 338 65.4
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.2e-125 454.1 341 64.8
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.2e-123 448.4 777 35.1
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 6.7e-119 432.6 779 35.9
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 2.4e-108 397.5 774 34.6
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 4.2e-105 386.7 478 47.5
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.5e-91 340.1 472 40.5
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 8.3e-85 319.3 252 64.7
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.2e-80 305.4 297 55.6
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 3.7e-77 293.9 241 60.2
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.6e-75 288.5 380 47.9
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.9e-74 283.9 183 71.0
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 3.7e-69 267.3 862 27.3
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.7e-67 261.2 324 44.1
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.3e-66 258.8 304 46.4
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.6e-57 226.9 189 59.3
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 7.6e-54 216.5 220 49.5
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.9e-53 214.5 144 70.1
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 1.4e-47 195.7 176 58.5
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 3.0e-42 177.9 158 56.3
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.1e-39 167.9 168 56.5
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 3.4e-38 164.5 230 45.7
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.3e-37 162.5 168 54.8
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.7e-37 162.2 233 38.2
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.2e-36 157.5 155 53.5
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.2e-35 156.0 216 45.8
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 4.8e-24 117.5 144 47.2
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 9.7e-17 93.2 106 43.4
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 2.8e-16 91.7 824 20.9
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-10 72.8 43 72.1
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.8e-10 72.4 404 22.8
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 7.4e-09 67.0 72 48.6
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.4e-07 62.8 72 48.6
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 7.7e-06 57.0 36 66.7


User provided reference genes

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