Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 1.1e-105 386.7 201 100.0
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 9.7e-83 310.5 198 79.8
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 2.2e-82 309.3 212 76.4
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 6.5e-79 297.7 205 74.6
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 4.7e-77 291.6 205 74.1
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.5e-75 286.6 211 69.7
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 3.3e-75 285.4 188 76.6
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 9.7e-75 283.9 208 70.2
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 2.2e-74 282.7 202 73.8
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 4.8e-74 281.6 208 70.7
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 6.3e-74 281.2 212 70.3
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.3e-71 273.5 194 73.2
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 9.4e-70 267.3 173 76.9
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.7e-69 265.8 208 66.3
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.7e-69 265.8 216 64.4
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.4e-68 263.5 203 70.0
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 3.0e-68 262.3 219 65.8
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 4.0e-68 261.9 220 63.6
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 4.0e-68 261.9 211 66.8
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 6.8e-68 261.2 235 62.1
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 2.0e-67 259.6 207 66.7
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 3.4e-67 258.8 184 72.3
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 4.4e-67 258.5 207 65.2
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 5.7e-67 258.1 181 72.4
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.7e-66 256.5 258 58.1
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 2.8e-66 255.8 219 64.4
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 2.8e-66 255.8 218 63.3
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 6.3e-66 254.6 238 60.5
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 8.3e-66 254.2 219 63.5
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.1e-65 253.8 220 62.7
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.8e-65 253.1 219 61.6
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.4e-65 252.7 173 74.6
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 5.4e-65 251.5 219 62.1
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 9.1e-65 250.8 218 63.3
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 1.2e-64 250.4 203 67.0
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.6e-64 250.0 208 65.4
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 2.0e-64 249.6 212 62.3
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.0e-64 249.6 212 65.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.0e-63 247.3 207 66.7
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.7e-63 246.5 220 61.4
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 2.9e-63 245.7 220 60.9
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.9e-62 243.0 264 53.0
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 9.5e-62 240.7 203 64.0
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 1.6e-61 240.0 196 65.8
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 2.1e-61 239.6 223 61.4
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 2.1e-61 239.6 223 61.0
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.8e-61 239.2 219 60.3
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 3.6e-61 238.8 220 60.5
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 6.1e-61 238.0 203 66.0
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 8.0e-61 237.7 211 61.6
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 8.0e-61 237.7 219 59.4
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.0e-60 237.3 219 57.5
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.0e-60 237.3 212 61.3
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.0e-60 237.3 220 60.0
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.4e-60 236.9 218 58.3
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-60 236.9 220 60.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.4e-60 236.9 220 61.4
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.8e-60 236.5 219 58.9
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.8e-60 236.5 223 60.1
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.3e-60 236.1 195 65.1
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-60 235.7 220 60.9
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 4.0e-60 235.3 200 63.5
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 4.0e-60 235.3 218 59.6
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 4.0e-60 235.3 202 64.4
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 5.2e-60 235.0 187 66.3
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 6.8e-60 234.6 219 58.0
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 6.8e-60 234.6 219 58.9
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 6.8e-60 234.6 184 65.2
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 8.9e-60 234.2 219 58.4
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 8.9e-60 234.2 219 57.5
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 8.9e-60 234.2 223 57.4
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.5e-59 233.4 219 59.8
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.5e-59 233.4 190 63.7
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.6e-59 232.6 220 60.0
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.6e-59 232.6 220 60.0
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.6e-59 232.6 220 60.0
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.6e-59 232.6 190 64.2
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.4e-59 232.3 219 59.4
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 4.4e-59 231.9 225 58.2
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 4.4e-59 231.9 225 58.2
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.7e-59 231.5 218 57.8
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 5.7e-59 231.5 184 65.8
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.8e-59 230.7 220 59.5
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.8e-59 230.7 220 59.5
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.8e-59 230.7 220 59.5
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 9.8e-59 230.7 223 59.6
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.3e-58 230.3 197 63.5
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.7e-58 229.9 202 63.9
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-58 229.6 220 59.5
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.2e-58 229.6 219 56.6
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.7e-58 228.8 218 56.4
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.7e-58 228.8 218 56.4
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 3.7e-58 228.8 223 56.5
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.7e-58 228.8 220 59.1
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 3.7e-58 228.8 221 57.5
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 3.7e-58 228.8 218 56.9
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 4.9e-58 228.4 218 56.4
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 8.3e-58 227.6 197 62.4
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 8.3e-58 227.6 218 56.0
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 8.3e-58 227.6 218 56.4
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 8.3e-58 227.6 247 53.4
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-57 227.3 197 62.9
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.1e-57 227.3 218 56.0
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.8e-57 226.5 218 56.0
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.8e-57 226.5 218 56.4
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 2.4e-57 226.1 218 56.0
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.4e-57 226.1 202 63.4
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 4.1e-57 225.3 218 55.5
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 7.0e-57 224.6 255 52.2
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 3.5e-56 222.2 191 61.8
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 5.9e-56 221.5 226 54.4
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.7e-55 219.9 223 57.8
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 2.9e-55 219.2 175 65.7
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 6.6e-55 218.0 249 53.0
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 1.5e-54 216.9 232 53.0
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 5.6e-54 214.9 178 66.3
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 4.9e-50 201.8 234 51.7
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.4e-50 201.4 191 60.2
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.0e-48 196.4 150 68.0
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 6.0e-48 194.9 201 56.2
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-47 193.7 164 64.0
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.4e-44 183.7 131 73.3
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.3e-42 177.2 107 83.2
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.7e-42 176.8 321 38.3
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 3.0e-39 166.0 150 63.3
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 5.6e-38 161.8 170 54.7
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 8.1e-37 157.9 123 69.1
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-36 157.5 148 62.2
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 2.2e-34 149.8 168 54.2
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-34 149.4 139 60.4
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 3.7e-34 149.1 133 60.9
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 4.9e-34 148.7 148 58.1
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 8.3e-34 147.9 137 63.5
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 4.1e-33 145.6 133 61.7
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 7.1e-33 144.8 119 63.0
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 2.5e-30 136.3 116 64.7
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.1e-29 131.3 90 71.1
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 3.1e-28 129.4 173 44.5
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 7.6e-27 124.8 194 42.3
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 4.9e-26 122.1 140 54.3
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 8.4e-26 121.3 169 42.6
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 2.1e-24 116.7 204 37.3
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 4.7e-21 105.5 83 66.3
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 3.1e-20 102.8 117 49.6
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 5.3e-20 102.1 105 54.3
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.9e-17 93.6 141 40.4
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.7e-15 84.7 62 61.3
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 6.9e-12 75.1 66 62.1
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 9.0e-12 74.7 135 37.0
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.9e-10 69.7 50 66.0
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 5.1e-07 58.9 174 31.6


User provided reference genes

Program Settings