Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007251 Daucus carota HOM05D001374 ORTHO05D004296 2.6e-45 184.9 85 100.0
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 5.7e-16 87.4 71 69.0
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 1.4e-14 82.8 87 56.3
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 4.1e-14 81.3 71 64.8
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 5.3e-14 80.9 71 63.4
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 6.9e-14 80.5 72 59.7
Actinidia14906 Actinidia chinensis HOM05D001374 ORTHO05D004296 2.0e-13 79.0 71 62.0
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 2.0e-13 79.0 71 63.4
CSS0016974 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 2.6e-13 78.6 84 57.1
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 2.6e-13 78.6 84 57.1
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 2.6e-13 78.6 71 62.0
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 4.5e-13 77.8 71 60.6
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 7.7e-13 77.0 71 60.6
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 1.0e-12 76.6 84 53.6
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 1.0e-12 76.6 71 62.0
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.0e-12 76.6 71 60.6
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 1.3e-12 76.3 87 52.9
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.3e-12 76.3 87 52.9
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.3e-12 76.3 87 52.9
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.3e-12 76.3 87 52.9
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 1.3e-12 76.3 71 62.0
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 1.3e-12 76.3 87 52.9
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 1.7e-12 75.9 84 54.8
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 1.7e-12 75.9 71 59.2
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.7e-12 75.9 90 51.1
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 1.7e-12 75.9 87 52.9
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 2.2e-12 75.5 87 52.9
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 2.2e-12 75.5 71 59.2
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 2.9e-12 75.1 71 60.6
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 2.9e-12 75.1 71 60.6
Dinv21063 Davidia involucrata HOM05D001374 ORTHO05D004296 2.9e-12 75.1 71 60.6
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 3.8e-12 74.7 71 59.2
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 3.8e-12 74.7 87 52.9
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 3.8e-12 74.7 87 51.7
EL10Ac7g17806 Beta vulgaris HOM05D001374 ORTHO05D004296 5.0e-12 74.3 71 60.6
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 5.0e-12 74.3 84 53.6
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 5.0e-12 74.3 86 52.3
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 5.0e-12 74.3 84 53.6
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 5.0e-12 74.3 71 59.2
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 5.0e-12 74.3 87 52.9
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 6.5e-12 73.9 87 51.7
Zm00001eb337800 Zea mays HOM05D001374 ORTHO05D004296 6.5e-12 73.9 87 52.9
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 8.5e-12 73.6 72 56.9
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 8.5e-12 73.6 70 58.6
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 8.5e-12 73.6 72 59.7
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 8.5e-12 73.6 71 57.7
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 1.1e-11 73.2 69 59.4
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 1.1e-11 73.2 71 59.2
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.1e-11 73.2 71 60.6
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 1.1e-11 73.2 71 56.3
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 1.1e-11 73.2 84 53.6
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 1.4e-11 72.8 71 56.3
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 1.4e-11 72.8 72 56.9
Glyma.20G117100 Glycine max HOM05D001374 ORTHO05D004296 1.4e-11 72.8 71 56.3
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 1.4e-11 72.8 71 57.7
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.9e-11 72.4 71 59.2
AUR62037316 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.9e-11 72.4 71 59.2
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 1.9e-11 72.4 71 57.7
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 2.5e-11 72.0 84 52.4
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 3.2e-11 71.6 71 57.7
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 3.2e-11 71.6 84 52.4
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 3.2e-11 71.6 84 52.4
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 4.2e-11 71.2 69 56.5
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 4.2e-11 71.2 71 59.2
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 4.2e-11 71.2 73 56.2
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 4.2e-11 71.2 71 56.3
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 4.2e-11 71.2 72 56.9
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 4.2e-11 71.2 71 59.2
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 4.2e-11 71.2 77 55.8
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 4.2e-11 71.2 69 58.0
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 5.5e-11 70.9 71 57.7
CDE06G1000 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 5.5e-11 70.9 87 49.4
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 5.5e-11 70.9 71 57.7
RcHm_v2.0_Chr1g0324801 Rosa chinensis HOM05D001374 ORTHO05D004296 5.5e-11 70.9 87 48.3
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 7.2e-11 70.5 71 59.2
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 7.2e-11 70.5 58 65.5
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 9.4e-11 70.1 69 58.0
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 9.4e-11 70.1 69 58.0
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 9.4e-11 70.1 69 58.0
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 9.4e-11 70.1 71 57.7
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 9.4e-11 70.1 71 60.6
SEGI_13900 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 1.2e-10 69.7 71 56.3
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 1.2e-10 69.7 72 56.9
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 1.6e-10 69.3 71 57.7
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.6e-10 69.3 71 59.2
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 1.6e-10 69.3 71 57.7
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 2.1e-10 68.9 70 57.1
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 2.1e-10 68.9 71 57.7
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 2.7e-10 68.6 62 61.3
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 2.7e-10 68.6 69 55.1
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 3.6e-10 68.2 71 56.3
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 3.6e-10 68.2 71 56.3
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 4.6e-10 67.8 69 59.4
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 4.6e-10 67.8 113 43.4
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 6.1e-10 67.4 71 57.7
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 6.1e-10 67.4 71 54.9
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 6.1e-10 67.4 71 54.9
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 7.9e-10 67.0 69 56.5
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 7.9e-10 67.0 113 42.5
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 7.9e-10 67.0 69 55.1
CDE07G1238 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 1.0e-09 66.6 74 51.4
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 1.4e-09 66.2 71 53.5
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 1.4e-09 66.2 69 55.1
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 1.4e-09 66.2 69 55.1
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 1.4e-09 66.2 69 55.1
Atru.chr7.1031 Acer truncatum HOM05D001374 ORTHO05D004296 1.8e-09 65.9 67 58.2
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 1.8e-09 65.9 71 53.5
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 1.8e-09 65.9 69 53.6
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 2.3e-09 65.5 84 48.8
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 2.3e-09 65.5 71 54.9
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 2.3e-09 65.5 71 53.5
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 3.0e-09 65.1 72 55.6
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 3.9e-09 64.7 69 56.5
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 5.1e-09 64.3 85 49.4
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 5.1e-09 64.3 85 49.4
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 5.1e-09 64.3 85 49.4
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 5.1e-09 64.3 85 49.4
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 5.1e-09 64.3 85 49.4
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 5.1e-09 64.3 85 49.4
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 6.7e-09 63.9 85 48.2
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 6.7e-09 63.9 71 54.9
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 8.8e-09 63.5 71 53.5
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 8.8e-09 63.5 71 53.5
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 1.1e-08 63.2 78 50.0
Lj6C756T1 Lonicera japonica HOM05D001374 ORTHO05D004296 1.5e-08 62.8 71 53.5
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 1.5e-08 62.8 58 60.3
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 1.9e-08 62.4 69 55.1
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 2.5e-08 62.0 72 52.8
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 3.3e-08 61.6 72 52.8
Mapoly0039s0055 Marchantia polymorpha HOM05D001374 ORTHO05D004296 4.3e-08 61.2 69 52.2
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 7.4e-08 60.5 85 48.2
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 9.7e-08 60.1 71 49.3
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 2.2e-07 58.9 72 50.0
BcaC01g01691 Brassica carinata HOM05D001374 ORTHO05D004296 2.8e-07 58.5 68 51.5
BolC3t19594H Brassica oleracea HOM05D001374 ORTHO05D004296 2.8e-07 58.5 68 51.5
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 3.7e-07 58.2 72 51.4
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 4.8e-07 57.8 71 47.9
BcaB03g12025 Brassica carinata HOM05D001374 ORTHO05D004296 6.3e-07 57.4 60 53.3
BcaB03g12026 Brassica carinata HOM05D001374 ORTHO05D004296 6.3e-07 57.4 60 53.3
BraA08t34642Z Brassica rapa HOM05D001374 ORTHO05D004296 6.3e-07 57.4 61 54.1
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 6.3e-07 57.4 71 49.3
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 6.3e-07 57.4 72 48.6
C03p72940 Brassica napus HOM05D001374 ORTHO05D004296 2.4e-06 55.5 65 50.8
A08p26960 Brassica napus HOM05D001374 ORTHO05D004296 5.3e-06 54.3 61 52.5
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 5.3e-06 54.3 57 50.9
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 5.3e-06 54.3 69 49.3


User provided reference genes

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