Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 0.0e+00 1342.8 698 100.0
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 8.9e-176 621.3 690 50.4
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.4e-173 614.0 708 48.7
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 6.0e-164 582.0 701 47.2
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 3.6e-161 572.8 715 47.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 6.4e-158 562.0 696 45.4
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.4e-157 560.8 701 46.1
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.2e-157 559.3 704 46.3
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.3e-155 553.5 704 44.2
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 8.7e-155 551.6 723 44.3
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.5e-154 550.1 705 45.1
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.5e-154 550.1 691 46.2
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.3e-154 549.7 723 44.1
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.3e-153 547.7 723 45.0
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.8e-153 545.8 695 45.6
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.8e-152 543.9 682 45.9
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 3.1e-152 543.1 727 43.6
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.0e-151 540.4 709 45.3
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.4e-149 534.3 722 42.4
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.9e-149 533.9 696 45.4
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 9.3e-149 531.6 695 45.2
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.1e-146 524.6 729 41.8
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 9.6e-146 521.5 695 44.5
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 3.7e-145 519.6 699 42.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.7e-145 519.6 719 44.1
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 6.2e-145 518.8 699 42.8
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 8.2e-145 518.5 710 42.4
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.8e-144 517.3 705 43.4
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.5e-143 514.2 699 42.6
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 4.5e-143 512.7 703 42.4
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.0e-142 511.5 700 43.4
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.7e-142 510.8 692 43.1
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.4e-141 507.7 729 42.9
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 5.5e-141 505.8 711 41.9
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.6e-140 504.2 700 43.3
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.6e-140 504.2 693 42.0
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.5e-140 503.1 725 41.2
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 6.1e-140 502.3 769 41.0
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 6.1e-140 502.3 725 41.0
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.0e-139 501.5 736 42.5
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 4.3e-138 496.1 843 38.6
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 7.4e-138 495.4 724 43.4
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 9.7e-138 495.0 721 42.9
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.6e-137 494.2 712 41.7
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 2.2e-137 493.8 725 41.7
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 3.7e-137 493.0 743 40.8
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 6.3e-137 492.3 720 42.1
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.4e-136 490.3 698 42.8
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.1e-136 489.6 720 41.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.2e-135 488.0 713 42.2
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 2.6e-135 486.9 701 41.8
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 3.4e-135 486.5 721 40.4
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.2e-134 483.8 719 41.6
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 5.1e-131 472.6 720 41.8
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 6.7e-131 472.2 690 40.1
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.5e-130 471.1 705 40.1
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.7e-129 467.6 698 40.3
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 8.2e-129 465.3 683 40.8
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 2.4e-128 463.8 584 44.9
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.1e-128 463.4 697 40.3
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.2e-126 457.2 697 40.2
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.9e-126 456.8 695 40.0
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.9e-125 454.1 707 40.3
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 7.2e-125 452.2 740 38.2
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 9.4e-125 451.8 697 40.0
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 3.0e-123 446.8 683 41.6
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 6.7e-123 445.7 618 42.7
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 2.6e-122 443.7 661 40.5
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 2.6e-122 443.7 694 39.6
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 3.3e-122 443.4 728 39.1
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.3e-122 443.4 672 39.6
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 5.7e-122 442.6 706 40.8
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 7.4e-122 442.2 726 39.3
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 9.7e-122 441.8 726 39.1
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 2.4e-120 437.2 703 37.8
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.2e-116 424.9 718 37.9
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 2.1e-116 424.1 716 39.2
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.0e-115 420.2 720 38.8
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 5.2e-115 419.5 710 37.9
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 2.6e-114 417.2 421 53.9
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 9.7e-114 415.2 709 37.8
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.7e-110 404.4 682 35.8
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 8.5e-110 402.1 714 37.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.5e-109 400.6 694 36.6
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 5.5e-109 399.4 760 36.8
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.6e-108 396.7 704 36.5
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 3.6e-108 396.7 419 51.3
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.1e-104 385.2 462 47.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 7.7e-103 379.0 696 36.8
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.3e-102 378.3 733 33.7
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.3e-102 378.3 662 38.1
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 3.8e-102 376.7 480 46.0
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.5e-101 374.8 696 35.3
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 2.5e-101 374.0 698 36.7
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.2e-101 373.6 688 34.7
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.6e-100 371.3 698 37.0
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 4.0e-99 366.7 699 35.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.0e-99 366.7 585 39.3
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 6.8e-99 365.9 698 36.2
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.5e-98 364.8 646 36.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 7.5e-98 362.5 697 35.2
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 3.7e-97 360.1 527 42.3
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.8e-96 357.8 639 36.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.1e-96 357.1 570 40.2
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 5.9e-95 352.8 547 42.0
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.8e-94 350.1 661 34.8
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 5.6e-93 346.3 715 35.2
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.3e-91 340.9 424 45.3
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.2e-84 318.5 673 33.1
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.0e-83 315.5 446 41.3
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 3.1e-83 313.9 407 42.5
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 4.4e-82 310.1 678 32.4
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 6.6e-78 296.2 533 37.9
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 8.1e-76 289.3 730 31.5
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.2e-73 281.2 726 31.0
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 2.9e-73 280.8 680 30.3
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.9e-70 270.4 555 35.0
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 4.7e-68 263.5 691 30.0
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 4.4e-66 256.9 366 41.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 2.2e-65 254.6 263 51.3
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.7e-65 253.8 364 43.1
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.4e-58 230.7 357 34.7
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.3e-57 228.8 396 36.1
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 8.1e-52 209.5 378 36.0
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 6.4e-49 199.9 706 26.6
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.0e-46 192.6 147 63.9
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.9e-38 164.1 222 42.3
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.1e-36 158.3 236 38.6
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.1e-35 156.0 807 23.7
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 7.1e-32 143.3 98 63.3
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-31 142.1 197 41.6
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.5e-31 141.0 781 23.2
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 6.0e-31 140.2 98 63.3
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-25 122.1 714 23.1
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.9e-23 113.2 325 30.2
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-22 112.1 107 47.7
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-21 109.4 261 30.3
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.5e-21 108.2 140 40.7
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 5.7e-21 107.1 491 24.8
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.6e-20 105.5 224 30.8
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.6e-18 98.2 192 32.3
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-14 85.5 222 29.3
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 5.1e-14 84.0 160 37.5
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.3e-11 73.9 314 24.2
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.0e-10 72.0 145 35.2
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 7.7e-10 70.1 193 27.5
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.2e-09 68.6 221 28.5
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.2e-09 68.6 119 37.8
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.9e-09 68.2 66 51.5
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.2e-08 64.7 64 54.7
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 4.2e-08 64.3 75 48.0
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 9.4e-08 63.2 147 29.9
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.8e-06 58.9 46 52.2


User provided reference genes

Program Settings