Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 4.6e-305 1050.4 533 100.0
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 1.4e-245 852.8 574 75.3
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 1.2e-244 849.7 597 72.5
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 2.2e-243 845.5 597 72.0
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 4.2e-242 841.3 598 72.7
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 7.2e-242 840.5 597 71.5
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 3.0e-240 835.1 590 73.1
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 8.8e-240 833.6 602 70.3
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 4.3e-239 831.2 556 73.7
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 5.7e-239 830.9 598 71.7
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 7.4e-239 830.5 556 73.9
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 2.8e-238 828.6 598 71.6
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 8.2e-238 827.0 634 66.9
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 1.4e-237 826.2 556 75.4
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 3.4e-236 821.6 598 70.2
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 4.5e-236 821.2 597 71.2
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 2.2e-235 818.9 597 69.5
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 2.9e-235 818.5 598 70.4
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 3.2e-234 815.1 597 68.5
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 9.4e-234 813.5 597 71.0
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 9.4e-234 813.5 594 69.7
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 1.6e-233 812.8 597 69.0
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.1e-233 812.4 585 70.9
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 2.7e-233 812.0 597 69.0
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 3.6e-233 811.6 597 68.7
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 3.6e-233 811.6 597 69.0
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.9e-233 810.4 585 70.8
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 1.4e-232 809.7 597 69.2
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 1.8e-232 809.3 606 69.5
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 1.8e-232 809.3 597 69.3
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 6.7e-232 807.4 598 68.4
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 6.7e-232 807.4 597 67.3
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 6.7e-232 807.4 597 68.8
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 1.5e-231 806.2 597 69.0
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.6e-231 805.4 585 70.6
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.6e-231 805.4 585 70.6
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 2.6e-231 805.4 594 69.2
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 2.6e-231 805.4 597 67.0
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 4.4e-231 804.7 595 69.6
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 4.4e-231 804.7 594 69.0
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 5.7e-231 804.3 595 69.7
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.7e-230 802.7 597 68.2
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 6.3e-230 800.8 597 67.8
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 2.4e-229 798.9 597 67.7
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 3.1e-229 798.5 636 66.0
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 7.0e-229 797.3 556 73.0
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 9.1e-229 797.0 593 69.3
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 1.2e-228 796.6 584 69.2
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 3.8e-227 791.6 556 70.5
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 2.5e-226 788.9 587 69.7
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 1.6e-225 786.2 593 68.5
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 6.1e-225 784.3 597 67.3
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 8.0e-225 783.9 597 67.0
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 1.4e-224 783.1 594 66.0
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 1.1e-223 780.0 595 66.2
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 2.6e-223 778.9 647 63.5
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 9.7e-223 776.9 595 66.9
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 3.1e-221 771.9 615 66.0
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 1.6e-220 769.6 597 66.3
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 2.6e-220 768.8 586 67.7
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 5.0e-219 764.6 570 68.4
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 1.1e-218 763.5 595 65.7
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 2.1e-217 759.2 620 63.7
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 3.6e-217 758.4 597 66.5
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 6.1e-217 757.7 601 65.2
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 1.2e-215 753.4 597 64.7
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 1.5e-215 753.1 597 64.5
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 4.4e-215 751.5 597 65.3
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 5.7e-215 751.1 587 65.4
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 5.7e-215 751.1 587 65.4
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 1.3e-214 750.0 587 65.1
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 2.8e-214 748.8 597 64.3
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 8.2e-214 747.3 597 64.3
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 3.1e-213 745.3 597 64.2
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 5.3e-213 744.6 597 63.3
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 1.6e-212 743.0 607 62.9
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 3.5e-212 741.9 597 63.7
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.9e-211 738.8 587 65.4
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 3.8e-211 738.4 586 65.5
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 1.1e-210 736.9 597 62.6
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 1.1e-210 736.9 564 67.6
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.5e-210 735.7 584 66.8
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 7.2e-210 734.2 598 64.5
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 3.6e-209 731.9 568 66.9
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 6.8e-208 727.6 598 63.2
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 5.7e-207 724.5 600 62.7
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 9.1e-205 717.2 539 68.6
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 1.2e-204 716.8 567 66.1
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 2.9e-203 712.2 607 60.6
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 7.2e-202 707.6 530 68.1
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 6.1e-201 704.5 548 67.0
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.0e-200 703.7 595 61.3
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.4e-197 692.6 595 62.9
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 5.4e-197 691.4 594 61.8
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 1.6e-196 689.9 593 59.7
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 2.0e-196 689.5 579 63.6
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 2.0e-196 689.5 590 60.7
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 5.0e-195 684.9 593 59.0
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 5.6e-194 681.4 617 60.1
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 2.3e-192 676.0 508 69.1
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 1.1e-184 650.6 593 59.7
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 1.2e-183 647.1 510 66.3
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 3.0e-171 605.9 562 58.0
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 9.5e-170 600.9 579 57.9
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 2.4e-168 596.3 412 73.3
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 1.0e-163 580.9 569 52.9
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 2.3e-163 579.7 606 51.8
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 3.6e-161 572.4 595 53.4
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 4.2e-157 558.9 388 74.0
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 5.3e-152 542.0 609 50.1
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 6.2e-145 518.5 590 48.0
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 6.7e-131 471.9 390 63.1
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 9.7e-122 441.4 317 70.0
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 2.8e-121 439.9 525 47.4
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 3.2e-109 399.8 278 69.4
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 1.8e-107 394.0 379 53.8
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 1.7e-102 377.5 233 76.4
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 5.5e-101 372.5 297 63.6
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.6e-100 370.9 321 60.7
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 1.6e-95 354.4 320 57.8
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 2.2e-94 350.5 233 69.5
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 9.4e-93 345.1 294 59.9
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 5.2e-91 339.3 375 52.5
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 1.4e-88 331.3 625 34.9
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.2e-84 318.2 277 59.6
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.6e-84 317.8 328 53.4
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 1.5e-77 294.7 193 73.6
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 3.1e-75 287.0 203 67.5
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 2.4e-72 277.3 201 69.2
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 1.2e-71 275.0 715 29.9
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 5.0e-70 269.6 250 55.6
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 2.1e-68 264.2 242 59.1
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 9.2e-64 248.8 241 56.4
Cc02_g10970 Coffea canephora HOM05D004229 ORTHO05D005468 5.6e-61 239.6 168 69.0
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-60 238.4 240 49.6
FAN13G0469 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.8e-59 234.6 256 50.8
FAN01G0054 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.6e-58 230.7 172 66.3
arahy.Tifrunner.gnm1.ann1.5LR8AY Arachis hypogaea HOM05D004229 ORTHO05D005468 5.1e-54 216.5 264 49.6
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 2.0e-50 204.5 719 26.3
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 4.6e-47 193.4 145 66.2
CBR_g31454 Chara braunii HOM05D004229 ORTHO05D005468 3.0e-46 190.7 176 56.8
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 5.1e-46 189.9 120 77.5
QL08p054473 Quercus lobata HOM05D004229 ORTHO05D005468 1.9e-45 188.0 133 67.7
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 4.3e-45 186.8 125 72.8
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.5e-42 178.3 131 65.6
QL08p054558 Quercus lobata HOM05D004229 ORTHO05D005468 1.5e-34 151.8 151 60.3
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 2.6e-34 151.0 148 57.4
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 9.6e-29 132.5 159 46.5
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 2.8e-28 131.0 497 25.2
SHI08895 Sapria himalayana HOM05D004229 ORTHO05D005468 6.0e-23 113.2 100 59.0
Carub.0005s2207 Capsella rubella HOM05D004229 ORTHO05D005468 4.3e-21 107.1 83 66.3
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 2.1e-20 104.8 77 71.4
CBR_g52606 Chara braunii HOM05D004229 ORTHO05D005468 1.2e-18 99.0 166 42.2
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 4.2e-16 90.5 70 72.9
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 7.2e-16 89.7 58 70.7
Solyc05g024120.3 Solanum lycopersicum HOM05D004229 ORTHO05D005468 1.8e-14 85.1 119 45.4
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 3.3e-13 80.9 51 76.5
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 3.3e-13 80.9 52 76.9
Sopen05g018750 Solanum pennellii HOM05D000004 ORTHO05D000002 3.3e-13 80.9 86 57.0
MELO3C028235.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.8e-12 77.8 75 52.0
RcHm_v2.0_Chr7g0237391 Rosa chinensis HOM05D004229 ORTHO05D005468 6.3e-12 76.6 58 67.2
Sopen01g012580 Solanum pennellii HOM05D004229 ORTHO05D026150 1.4e-11 75.5 47 76.6
Sopen05g018790 Solanum pennellii HOM05D004229 ORTHO05D005468 5.9e-10 70.1 119 38.7
Solyc01g016900.1 Solanum lycopersicum HOM05D004229 ORTHO05D026150 1.7e-09 68.6 107 39.3
Sopen01g007880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.7e-09 68.6 47 72.3
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 6.5e-09 66.6 54 59.3
Solyc05g024110.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 4.2e-08 63.9 41 65.9
Solyc11g030770.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 9.4e-08 62.8 44 68.2
Sopen05g016270 Solanum pennellii HOM05D004229 ORTHO05D026150 2.1e-07 61.6 43 72.1
SGA_v2.0_scaffold20G09184 Striga asiatica HOM05D042722 ORTHO05D051393 6.1e-07 60.1 51 52.9


User provided reference genes

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