Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006338 Daucus carota HOM05D003508 ORTHO05D004579 1.1e-156 556.6 276 100.0
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 1.9e-137 492.7 276 86.6
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 2.7e-136 488.8 277 86.3
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.4e-135 486.5 277 85.9
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 8.8e-135 483.8 277 85.2
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 1.7e-133 479.6 277 86.6
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 3.7e-133 478.4 277 83.4
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 3.7e-133 478.4 277 81.9
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 8.2e-133 477.2 277 83.8
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 3.1e-132 475.3 277 81.9
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 4.1e-132 474.9 277 81.9
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 5.3e-132 474.6 277 83.8
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 5.3e-132 474.6 277 81.2
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 1.2e-131 473.4 281 81.5
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 1.6e-131 473.0 279 83.9
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 1.6e-131 473.0 277 80.9
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 2.7e-131 472.2 277 83.8
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 1.0e-130 470.3 277 83.8
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 2.2e-130 469.2 277 80.5
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 2.2e-130 469.2 275 83.3
Oeu026584.1 Olea europaea HOM05D003508 ORTHO05D004579 3.8e-130 468.4 284 81.3
Actinidia36696 Actinidia chinensis HOM05D003508 ORTHO05D004579 6.5e-130 467.6 277 83.4
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 1.5e-129 466.5 277 80.5
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 1.9e-129 466.1 277 80.5
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 4.2e-129 464.9 275 81.5
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 5.5e-129 464.5 277 82.7
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 7.2e-129 464.2 277 81.2
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 2.1e-128 462.6 277 80.5
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 2.1e-128 462.6 276 80.1
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 2.1e-128 462.6 279 80.6
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 2.7e-128 462.2 277 79.8
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 4.7e-128 461.5 277 81.6
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 6.1e-128 461.1 275 81.1
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 6.1e-128 461.1 277 80.1
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 8.0e-128 460.7 287 77.4
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 1.0e-127 460.3 277 80.5
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 1.4e-127 459.9 277 79.1
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 1.4e-127 459.9 277 79.8
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 1.8e-127 459.5 276 79.3
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 1.8e-127 459.5 276 79.7
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 1.8e-127 459.5 277 78.7
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 2.3e-127 459.1 277 81.2
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 3.0e-127 458.8 277 80.9
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 3.0e-127 458.8 277 80.9
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 4.0e-127 458.4 277 80.5
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 6.8e-127 457.6 277 81.2
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 1.2e-126 456.8 277 79.8
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 5.7e-126 454.5 277 79.4
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 5.7e-126 454.5 277 79.8
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 2.2e-125 452.6 277 80.1
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 2.8e-125 452.2 277 79.1
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 3.7e-125 451.8 276 78.3
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 4.8e-125 451.4 277 79.1
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 4.8e-125 451.4 277 78.3
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 8.3e-125 450.7 277 79.1
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 1.4e-124 449.9 276 78.3
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 3.1e-124 448.7 277 77.3
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 3.1e-124 448.7 277 79.4
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 4.1e-124 448.4 285 77.5
vmacro10305 Vaccinium macrocarpon HOM05D003508 ORTHO05D004579 1.6e-123 446.4 277 79.4
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 2.0e-123 446.0 278 79.5
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 7.7e-123 444.1 276 78.6
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 1.0e-122 443.7 275 76.4
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 1.3e-122 443.4 277 77.3
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 1.7e-122 443.0 277 77.3
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 1.7e-122 443.0 276 77.9
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 2.3e-122 442.6 275 76.7
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 2.3e-122 442.6 287 75.3
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 2.3e-122 442.6 280 78.9
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 3.8e-122 441.8 277 77.3
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 3.8e-122 441.8 304 72.4
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 3.8e-122 441.8 277 78.0
Rhsim09G0142500 Rhododendron simsii HOM05D003508 ORTHO05D004579 5.0e-122 441.4 277 78.7
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 6.5e-122 441.0 277 76.9
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 6.5e-122 441.0 277 77.3
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 2.5e-121 439.1 277 76.9
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 2.5e-121 439.1 277 76.5
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 4.2e-121 438.3 277 76.9
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 7.2e-121 437.6 277 76.9
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 7.2e-121 437.6 277 76.5
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 9.5e-121 437.2 277 76.9
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 9.5e-121 437.2 277 76.9
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 1.2e-120 436.8 277 78.0
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 1.6e-120 436.4 277 76.5
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 1.6e-120 436.4 277 76.5
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 1.6e-120 436.4 277 76.5
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 2.8e-120 435.6 277 77.6
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 2.8e-120 435.6 277 76.9
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 1.0e-119 433.7 277 75.8
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 1.4e-119 433.3 275 76.4
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 1.8e-119 433.0 277 76.2
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 1.8e-119 433.0 277 75.8
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 5.2e-119 431.4 326 68.4
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 5.2e-119 431.4 277 75.5
Gohir.D13G011400 Gossypium hirsutum HOM05D003508 ORTHO05D004579 5.2e-119 431.4 277 77.6
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 6.8e-119 431.0 290 73.8
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 6.8e-119 431.0 290 73.8
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 6.8e-119 431.0 290 73.8
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 8.9e-119 430.6 277 76.2
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 8.9e-119 430.6 284 73.6
Haze_01394 Corylus avellana HOM05D003508 ORTHO05D004579 1.5e-118 429.9 297 71.4
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 3.4e-118 428.7 276 76.8
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 6.3e-117 424.5 277 77.6
Sc06g0002320 Simmondsia chinensis HOM05D003508 ORTHO05D004579 6.3e-117 424.5 277 74.4
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 8.3e-117 424.1 309 69.3
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 2.7e-115 419.1 277 72.2
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 3.5e-115 418.7 277 74.0
MBI16_g39317_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 5.0e-114 414.8 286 69.6
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 6.6e-114 414.5 276 72.8
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 7.3e-113 411.0 276 74.3
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 1.2e-112 410.2 276 73.6
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 1.6e-112 409.8 276 72.8
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 3.6e-112 408.7 276 72.8
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 4.0e-111 405.2 275 71.6
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 5.2e-111 404.8 277 71.5
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 6.8e-111 404.4 277 72.2
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 1.5e-110 403.3 277 71.1
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 2.6e-110 402.5 323 66.9
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 9.8e-110 400.6 277 70.4
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 1.3e-109 400.2 277 71.5
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 2.9e-109 399.1 277 73.3
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 6.4e-109 397.9 277 69.3
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 6.4e-109 397.9 277 71.5
Nitab4.5_0005622g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 8.3e-109 397.5 292 69.2
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 3.5e-107 392.1 278 66.5
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 1.3e-106 390.2 310 66.1
ATR0081G016 Amborella trichopoda HOM05D003508 ORTHO05D004579 1.7e-106 389.8 276 68.5
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 2.7e-99 365.9 277 66.4
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 1.0e-98 364.0 278 69.4
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 1.3e-98 363.6 278 68.0
Mapoly0007s0128 Marchantia polymorpha HOM05D003508 ORTHO05D004579 4.3e-97 358.6 275 63.6
SGA_v2.0_scaffold62G21342 Striga asiatica HOM05D003508 ORTHO05D004579 3.6e-96 355.5 217 81.1
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 4.0e-95 352.1 277 62.1
Oeu025589.3 Olea europaea HOM05D003508 ORTHO05D004579 2.6e-94 349.4 214 78.5
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.3e-93 347.1 275 64.0
Pp3c6_12700 Physcomitrium patens HOM05D003508 ORTHO05D004579 1.7e-93 346.7 275 60.7
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 3.7e-93 345.5 216 76.9
AagrBONN_evm.TU.Sc2ySwM_117.3316 Anthoceros agrestis HOM05D003508 ORTHO05D004579 6.4e-93 344.7 275 61.5
MBI17_g42676_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 5.4e-92 341.7 276 62.0
Thhalv10016888m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 7.6e-86 321.2 198 77.8
SMO203G0120 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 9.2e-84 314.3 260 59.6
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 1.6e-83 313.5 276 58.7
Rhsim03G0099400 Rhododendron simsii HOM05D003508 ORTHO05D004579 1.2e-78 297.4 271 60.1
Actinidia18595 Actinidia chinensis HOM05D003508 ORTHO05D004579 7.6e-78 294.7 205 72.2
Dinv11847 Davidia involucrata HOM05D003508 ORTHO05D004579 3.2e-76 289.3 175 81.7
CBR_g26358 Chara braunii HOM05D003508 ORTHO05D004579 4.2e-76 288.9 283 54.1
Atru.chr12.1012 Acer truncatum HOM05D003508 ORTHO05D004579 7.1e-76 288.1 162 85.2
CDE04G2729 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 4.6e-75 285.4 198 67.7
Sabra10G0186100 Salix brachista HOM05D003508 ORTHO05D004579 4.3e-73 278.9 168 81.5
CiPaw.14G033200 Carya illinoinensis HOM05D003508 ORTHO05D004579 2.6e-70 269.6 157 79.6
CsaV3_7G016180 Cucumis sativus L. HOM05D003508 ORTHO05D004579 2.6e-70 269.6 253 56.5
Lj2C31T21 Lonicera japonica HOM05D003508 ORTHO05D004579 2.4e-55 219.9 138 79.7
TAR636G1619 Trochodendron aralioides HOM05D003508 ORTHO05D004579 1.5e-49 200.7 279 44.4
Cfa022308 Carpinus fangiana HOM05D003508 ORTHO05D004579 6.9e-47 191.8 180 53.9
Haze_26564 Corylus avellana HOM05D003508 ORTHO05D004579 1.7e-37 160.6 169 48.5
BcaNung06364 Brassica carinata HOM05D003508 ORTHO05D004579 1.6e-35 154.1 92 80.4
PGSC0003DMG400011919 Solanum tuberosum HOM05D003508 ORTHO05D004579 6.1e-35 152.1 92 78.3
QL04p041546 Quercus lobata HOM05D003508 ORTHO05D004579 3.7e-32 142.9 95 74.7
SMO203G0126 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 7.2e-28 128.6 85 71.8
Gorai.003G053700 Gossypium raimondii HOM05D003508 ORTHO05D017053 5.3e-23 112.5 63 81.0
SMO197G0052 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 7.0e-23 112.1 129 51.2
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 2.6e-22 110.2 63 79.4
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.5e-22 109.8 63 79.4
Gohir.D07G221800 Gossypium hirsutum HOM05D003508 ORTHO05D017053 3.5e-22 109.8 73 71.2
Gorai.001G156500 Gossypium raimondii HOM05D003508 ORTHO05D017053 3.5e-22 109.8 73 71.2
Gorai.008G061300 Gossypium raimondii HOM05D003508 ORTHO05D017053 4.5e-22 109.4 88 61.4
Peaxi162Scf00173g00513 Petunia axillaris HOM05D003508 ORTHO05D004579 5.9e-22 109.0 67 76.1
Duzib128G1625 Durio zibethinus HOM05D003508 ORTHO05D004579 5.0e-21 105.9 75 70.7
Gohir.D11G205701 Gossypium hirsutum HOM05D003508 ORTHO05D017053 2.5e-20 103.6 67 73.1
Gohir.D10G141300 Gossypium hirsutum HOM05D003508 ORTHO05D017053 3.2e-20 103.2 63 76.2
Lsat_1_v5_gn_3_135760 Lactuca sativa HOM05D000041 ORTHO05D000452 5.5e-20 102.4 67 71.6
Nitab4.5_0000561g0090 Nicotiana tabacum HOM05D003508 ORTHO05D017053 1.6e-11 74.3 57 59.6
Gohir.D05G325100 Gossypium hirsutum HOM05D003508 ORTHO05D010805 4.0e-10 69.7 36 88.9
Gorai.009G349300 Gossypium raimondii HOM05D003508 ORTHO05D010805 4.0e-10 69.7 36 88.9
Gohir.D01G171250 Gossypium hirsutum HOM05D003508 ORTHO05D017053 1.2e-09 68.2 37 86.5
Gohir.D10G176800 Gossypium hirsutum HOM05D003508 ORTHO05D010805 1.2e-09 68.2 36 86.1
Os02g0107200 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 2.0e-09 67.4 36 80.6
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.5e-09 65.5 36 80.6
Sc09g0005390 Simmondsia chinensis HOM05D003508 ORTHO05D389535 9.8e-09 65.1 56 58.9
Gohir.D10G063000 Gossypium hirsutum HOM05D003508 ORTHO05D017053 2.2e-08 63.9 37 78.4


User provided reference genes

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