Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006086 Daucus carota HOM05D034262 ORTHO05D025223 3.2e-53 211.5 105 100.0
DCAR_006101 Daucus carota HOM05D034262 ORTHO05D025223 3.6e-20 101.7 62 80.6
DCAR_006097 Daucus carota HOM05D034262 ORTHO05D025223 8.0e-20 100.5 62 80.6
DCAR_020364 Daucus carota HOM05D001023 ORTHO05D000912 2.4e-16 89.0 53 77.4
AUR62006013 Chenopodium quinoa HOM05D001023 ORTHO05D000912 1.2e-07 60.1 82 39.0
AUR62035613 Chenopodium quinoa HOM05D001023 ORTHO05D000912 1.2e-07 60.1 82 39.0
Peaxi162Scf00618g00017 Petunia axillaris HOM05D001023 ORTHO05D000912 1.2e-07 60.1 84 40.5
Migut.F00157 Erythranthe guttata HOM05D001023 ORTHO05D000912 1.6e-07 59.7 82 39.0
Manes.01G042400 Manihot esculenta HOM05D001023 ORTHO05D000912 1.6e-07 59.7 82 39.0
Manes.01G042600 Manihot esculenta HOM05D001023 ORTHO05D000912 2.0e-07 59.3 82 39.0
ATR0078G017 Amborella trichopoda HOM05D001023 ORTHO05D000912 2.7e-07 58.9 84 38.1
Potri.012G022000 Populus trichocarpa HOM05D001023 ORTHO05D000912 2.7e-07 58.9 82 37.8
Potri.015G005400 Populus trichocarpa HOM05D001023 ORTHO05D000912 2.7e-07 58.9 84 36.9
unitig_0.g2629 Utricularia gibba HOM05D001023 ORTHO05D001820 2.7e-07 58.9 82 39.0
ECA238G2237 Erigeron canadensis HOM05D001023 ORTHO05D000912 3.5e-07 58.5 84 38.1
Sabra11G0148000 Salix brachista HOM05D001023 ORTHO05D000912 3.5e-07 58.5 61 45.9
Sabra16G0302900 Salix brachista HOM05D001023 ORTHO05D000912 3.5e-07 58.5 82 39.0
Dinv35377 Davidia involucrata HOM05D001023 ORTHO05D000912 4.5e-07 58.2 82 37.8
HanXRQChr14g0439811 Helianthus annuus HOM05D001023 ORTHO05D000912 4.5e-07 58.2 84 38.1
Hma1.2p1_0094F.1_g047300 Hydrangea macrophylla HOM05D001023 ORTHO05D000912 4.5e-07 58.2 84 38.1
Potri.001G448800 Populus trichocarpa HOM05D001023 ORTHO05D000912 4.5e-07 58.2 49 51.0
Migut.F00994 Erythranthe guttata HOM05D001023 ORTHO05D000912 5.9e-07 57.8 82 37.8
Lsat_1_v5_gn_2_60681 Lactuca sativa HOM05D001023 ORTHO05D000912 5.9e-07 57.8 84 38.1
Lj1C1027G15 Lonicera japonica HOM05D001023 ORTHO05D000912 5.9e-07 57.8 84 38.1
EL10Ac3g05190 Beta vulgaris HOM05D001023 ORTHO05D000912 7.7e-07 57.4 82 39.0
DCAR_008978 Daucus carota HOM05D001023 ORTHO05D000912 7.7e-07 57.4 49 46.9
Nitab4.5_0000319g0140 Nicotiana tabacum HOM05D001023 ORTHO05D000912 7.7e-07 57.4 84 38.1
Nitab4.5_0006389g0030 Nicotiana tabacum HOM05D001023 ORTHO05D000912 7.7e-07 57.4 84 38.1
PSO135G0418 Papaver somniferum HOM05D001023 ORTHO05D000912 7.7e-07 57.4 82 35.4
A09p28620 Brassica napus HOM05D001023 ORTHO05D000912 1.0e-06 57.0 49 49.0
BraA09t38423Z Brassica rapa HOM05D001023 ORTHO05D000912 1.0e-06 57.0 49 49.0
ECA240G3572 Erigeron canadensis HOM05D001023 ORTHO05D000912 1.0e-06 57.0 82 36.6
Nitab4.5_0002895g0030 Nicotiana tabacum HOM05D001023 ORTHO05D000912 1.0e-06 57.0 84 38.1
Nitab4.5_0004309g0010 Nicotiana tabacum HOM05D001023 ORTHO05D000912 1.0e-06 57.0 82 37.8
Sabra05G0139900 Salix brachista HOM05D001023 ORTHO05D000912 1.0e-06 57.0 50 50.0
Sopen06g018360 Solanum pennellii HOM05D001023 ORTHO05D000912 1.0e-06 57.0 82 37.8
vmacro09433 Vaccinium macrocarpon HOM05D001023 ORTHO05D000912 1.0e-06 57.0 51 47.1
BcaC05g27310 Brassica carinata HOM05D001023 ORTHO05D000912 1.3e-06 56.6 82 37.8
A09p33520 Brassica napus HOM05D001023 ORTHO05D000912 1.3e-06 56.6 82 37.8
C05p32310 Brassica napus HOM05D001023 ORTHO05D000912 1.3e-06 56.6 82 37.8
BolC5t31963H Brassica oleracea HOM05D001023 ORTHO05D000912 1.3e-06 56.6 82 37.8
Cc02_g00890 Coffea canephora HOM05D001023 ORTHO05D000912 1.3e-06 56.6 84 38.1
HanXRQChr12g0382101 Helianthus annuus HOM05D001023 ORTHO05D000912 1.3e-06 56.6 89 37.1
Rhsim09G0209300 Rhododendron simsii HOM05D001023 ORTHO05D000912 1.3e-06 56.6 49 49.0
Sabra12G0011700 Salix brachista HOM05D001023 ORTHO05D000912 1.3e-06 56.6 82 37.8
SMO119G0304 Selaginella moellendorffii HOM05D001023 ORTHO05D000912 1.3e-06 56.6 82 36.6
SMO163G0054 Selaginella moellendorffii HOM05D001023 ORTHO05D000912 1.3e-06 56.6 82 36.6
Hund21052 Selenicereus undatus HOM05D001023 ORTHO05D000912 1.3e-06 56.6 82 37.8
BraA09t38893Z Brassica rapa HOM05D001023 ORTHO05D000912 1.7e-06 56.2 49 49.0
DCAR_020365 Daucus carota HOM05D001023 ORTHO05D000912 1.7e-06 56.2 48 47.9
ECA233G0573 Erigeron canadensis HOM05D001023 ORTHO05D000912 1.7e-06 56.2 84 36.9
Lsat_1_v5_gn_5_67100 Lactuca sativa HOM05D001023 ORTHO05D000912 1.7e-06 56.2 89 36.0
Lalb_Chr19g0133581 Lupinus albus HOM05D001023 ORTHO05D000912 1.7e-06 56.2 79 41.8
Nn3g18863 Nelumbo nucifera HOM05D001023 ORTHO05D000912 1.7e-06 56.2 84 36.9
Peaxi162Scf00300g00849 Petunia axillaris HOM05D001023 ORTHO05D000912 1.7e-06 56.2 89 37.1
Potri.011G152700 Populus trichocarpa HOM05D001023 ORTHO05D000912 1.7e-06 56.2 82 37.8
Sabra15G0003800 Salix brachista HOM05D001023 ORTHO05D000912 1.7e-06 56.2 50 46.0
SalBow6G2901 Salvia bowleyana HOM05D001023 ORTHO05D000912 1.7e-06 56.2 84 36.9
GSVIVG01038633001 Vitis vinifera HOM05D001023 ORTHO05D000912 1.7e-06 56.2 84 38.1
Atru.chr12.2404 Acer truncatum HOM05D001023 ORTHO05D000912 2.3e-06 55.8 81 38.3
Aqoxy5G04341 Aquilegia oxysepala HOM05D001023 ORTHO05D000912 2.3e-06 55.8 84 38.1
MSTRG.8614 Avicennia marina HOM05D001023 ORTHO05D000912 2.3e-06 55.8 82 36.6
CARHR255980 Cardamine hirsuta HOM05D001023 ORTHO05D000912 2.3e-06 55.8 49 46.9
DCAR_010576 Daucus carota HOM05D001023 ORTHO05D000912 2.3e-06 55.8 83 39.8
HanXRQChr03g0090151 Helianthus annuus HOM05D001023 ORTHO05D000912 2.3e-06 55.8 82 35.4
PSO478G3532 Papaver somniferum HOM05D001023 ORTHO05D000912 2.3e-06 55.8 49 46.9
PSO782G4539 Papaver somniferum HOM05D001023 ORTHO05D000912 2.3e-06 55.8 49 46.9
Pp3c24_9420 Physcomitrium patens HOM05D001023 ORTHO05D000912 2.3e-06 55.8 82 36.6
Pp3c8_13170 Physcomitrium patens HOM05D001023 ORTHO05D000912 2.3e-06 55.8 82 36.6
Thecc.03G207600 Theobroma cacao HOM05D001023 ORTHO05D000912 2.3e-06 55.8 82 37.8
Actinidia08691 Actinidia chinensis HOM05D001023 ORTHO05D000912 2.9e-06 55.5 84 36.9
Actinidia22216 Actinidia chinensis HOM05D001023 ORTHO05D000912 2.9e-06 55.5 70 41.4
AagrBONN_evm.TU.Sc2ySwM_228.2530 Anthoceros agrestis HOM05D001023 ORTHO05D000912 2.9e-06 55.5 82 36.6
EL10Ac5g12405 Beta vulgaris HOM05D001023 ORTHO05D000912 2.9e-06 55.5 49 51.0
BcaC04g21050 Brassica carinata HOM05D001023 ORTHO05D000912 2.9e-06 55.5 46 50.0
C09p36230 Brassica napus HOM05D001023 ORTHO05D000912 2.9e-06 55.5 46 50.0
Cpa.g.sc3.149 Carica papaya HOM05D001023 ORTHO05D000912 2.9e-06 55.5 79 38.0
CiPaw.06G041700 Carya illinoinensis HOM05D001023 ORTHO05D000912 2.9e-06 55.5 79 36.7
CDE09G0750 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 2.9e-06 55.5 84 36.9
CDE11G0788 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 2.9e-06 55.5 84 36.9
DCAR_014561 Daucus carota HOM05D001023 ORTHO05D000912 2.9e-06 55.5 81 37.0
HanXRQChr03g0072451 Helianthus annuus HOM05D001023 ORTHO05D000912 2.9e-06 55.5 46 50.0
Os08g0116400 Oryza sativa ssp. japonica HOM05D001023 ORTHO05D000912 2.9e-06 55.5 84 36.9
Actinidia28279 Actinidia chinensis HOM05D001023 ORTHO05D000912 3.8e-06 55.1 84 38.1
AL6G44680 Arabidopsis lyrata HOM05D001023 ORTHO05D000912 3.8e-06 55.1 49 46.9
BcaB01g01491 Brassica carinata HOM05D001023 ORTHO05D000912 3.8e-06 55.1 49 46.9
COL.COLO4_14361 Corchorus olitorius HOM05D001023 ORTHO05D000912 3.8e-06 55.1 82 37.8
MELO3C024854.2 Cucumis melo HOM05D001023 ORTHO05D000912 3.8e-06 55.1 79 38.0
CsaV3_4G008520 Cucumis sativus L. HOM05D001023 ORTHO05D000912 3.8e-06 55.1 79 38.0
Thhalv10028784m.g Eutrema salsugineum HOM05D001023 ORTHO05D000912 3.8e-06 55.1 85 37.6
HanXRQChr04g0115061 Helianthus annuus HOM05D001023 ORTHO05D000912 3.8e-06 55.1 84 36.9
HanXRQChr13g0418511 Helianthus annuus HOM05D001023 ORTHO05D000912 3.8e-06 55.1 82 36.6
Lj1g0013475 Lotus japonicus HOM05D001023 ORTHO05D000912 3.8e-06 55.1 63 41.3
PSO063G3832 Papaver somniferum HOM05D001023 ORTHO05D000912 3.8e-06 55.1 82 36.6
PSO782G2033 Papaver somniferum HOM05D001023 ORTHO05D000912 3.8e-06 55.1 82 36.6
Sp6g06840 Schrenkiella parvula HOM05D001023 ORTHO05D000912 3.8e-06 55.1 49 46.9
TAR375G0968 Trochodendron aralioides HOM05D001023 ORTHO05D000912 3.8e-06 55.1 75 37.3
unitig_92.g28242 Utricularia gibba HOM05D001023 ORTHO05D000912 3.8e-06 55.1 82 36.6
Atru.chr9.1858 Acer truncatum HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
AL1G47100 Arabidopsis lyrata HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 36.6
AT1G32790 Arabidopsis thaliana HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 36.6
BcaB01g02744 Brassica carinata HOM05D001023 ORTHO05D000912 5.0e-06 54.7 85 36.5
CANSAT21G1140 Cannabis sativa HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
Carub.0001s3112 Capsella rubella HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 36.6
CAN.G303.10 Capsicum annuum HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 35.4
CARHR032170 Cardamine hirsuta HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 36.6
CiPaw.06G041900 Carya illinoinensis HOM05D001023 ORTHO05D000912 5.0e-06 54.7 79 35.4
Ciclev10023768m.g Citrus clementina HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
Thhalv10008028m.g Eutrema salsugineum HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 36.6
FvH4_5g10630 Fragaria vesca HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
FAN08G2139 Fragaria x ananassa HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
FAN13G2966 Fragaria x ananassa HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 36.6
Lsat_1_v5_gn_3_110901 Lactuca sativa HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 35.7
MD06G1121700 Malus domestica HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
MD14G1138200 Malus domestica HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
Nn1g00430 Nelumbo nucifera HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
Phvul.009G046100 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 5.0e-06 54.7 81 37.0
Prupe.5G132400 Prunus persica HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 36.6
QL02p027507 Quercus lobata HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
RcHm_v2.0_Chr7g0187511 Rosa chinensis HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
SalBow2G0210 Salvia bowleyana HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 35.7
Sp1g28170 Schrenkiella parvula HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 36.6
Solyc06g053300.3 Solanum lycopersicum HOM05D001023 ORTHO05D000912 5.0e-06 54.7 82 36.6
SGA_v2.0_scaffold141G35551 Striga asiatica HOM05D001023 ORTHO05D000912 5.0e-06 54.7 49 46.9
TWI15G1139 Tripterygium wilfordii HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
GSVIVG01019674001 Vitis vinifera HOM05D001023 ORTHO05D000912 5.0e-06 54.7 84 36.9
Zm00001eb431630 Zea mays HOM05D001023 ORTHO05D000912 5.0e-06 54.7 49 46.9
Actinidia34262 Actinidia chinensis HOM05D001023 ORTHO05D000912 6.6e-06 54.3 84 36.9
Aa31LG6G7460 Aethionema arabicum HOM05D001023 ORTHO05D000912 6.6e-06 54.3 82 36.6
ClCG07G017440 Citrullus lanatus HOM05D001023 ORTHO05D000912 6.6e-06 54.3 47 48.9
Haze_00284 Corylus avellana HOM05D001023 ORTHO05D000912 6.6e-06 54.3 81 35.8
FAN04G2353 Fragaria x ananassa HOM05D001023 ORTHO05D000912 6.6e-06 54.3 84 36.9
FAN18G4140 Fragaria x ananassa HOM05D001023 ORTHO05D000912 6.6e-06 54.3 49 46.9
Glyma.04G229400 Glycine max HOM05D001023 ORTHO05D000912 6.6e-06 54.3 81 37.0
Gohir.A11G016300 Gossypium hirsutum HOM05D001023 ORTHO05D000912 6.6e-06 54.3 81 35.8
Gohir.D11G016100 Gossypium hirsutum HOM05D001023 ORTHO05D000912 6.6e-06 54.3 81 35.8
Gorai.007G016900 Gossypium raimondii HOM05D001023 ORTHO05D000912 6.6e-06 54.3 81 35.8
Lj3A897T89 Lonicera japonica HOM05D001023 ORTHO05D000912 6.6e-06 54.3 82 36.6
Os02g0244600 Oryza sativa ssp. japonica HOM05D001023 ORTHO05D000912 6.6e-06 54.3 79 36.7
TAR374G0691 Trochodendron aralioides HOM05D001023 ORTHO05D000912 6.6e-06 54.3 78 37.2
vmacro06432 Vaccinium macrocarpon HOM05D001023 ORTHO05D000912 6.6e-06 54.3 49 46.9
VMungo1309G1740 Vigna mungo HOM05D001023 ORTHO05D000912 6.6e-06 54.3 81 37.0
Aa31LG9G11390 Aethionema arabicum HOM05D001023 ORTHO05D000912 8.6e-06 53.9 82 36.6
AT3G14450 Arabidopsis thaliana HOM05D001023 ORTHO05D000912 8.6e-06 53.9 81 39.5
CDE02G2733 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 8.6e-06 53.9 84 35.7
Eucgr.K00426 Eucalyptus grandis HOM05D001023 ORTHO05D000912 8.6e-06 53.9 82 39.0
Glyma.08G176400 Glycine max HOM05D001023 ORTHO05D000912 8.6e-06 53.9 82 37.8
Gohir.D04G000045 Gossypium hirsutum HOM05D001023 ORTHO05D000912 8.6e-06 53.9 82 36.6
Gohir.D04G000070 Gossypium hirsutum HOM05D001023 ORTHO05D000912 8.6e-06 53.9 82 36.6
Prupe.2G318100 Prunus persica HOM05D001023 ORTHO05D000912 8.6e-06 53.9 81 37.0
Sed0010724 Sechium edule HOM05D001023 ORTHO05D000912 8.6e-06 53.9 79 38.0
Sed0026199 Sechium edule HOM05D001023 ORTHO05D000912 8.6e-06 53.9 79 38.0
Solyc03g082390.3 Solanum lycopersicum HOM05D001023 ORTHO05D000912 8.6e-06 53.9 84 35.7
Sopen03g022120 Solanum pennellii HOM05D001023 ORTHO05D000912 8.6e-06 53.9 84 35.7
SGA_v2.0_scaffold18G08459 Striga asiatica HOM05D001023 ORTHO05D000912 8.6e-06 53.9 49 46.9


User provided reference genes

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