Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1434.5 724 100.0
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1266.1 709 88.9
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1264.6 707 88.4
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1261.1 707 88.1
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1259.2 707 88.0
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1256.9 707 87.7
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1256.5 707 87.7
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1256.1 707 88.0
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1255.4 707 87.4
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1253.8 707 87.6
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1251.9 707 88.0
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1251.5 707 87.8
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1250.0 707 87.3
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1248.8 708 87.6
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1247.6 708 86.6
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1247.6 707 87.6
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1247.3 707 87.6
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1245.0 707 87.0
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1244.6 704 87.1
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1244.6 707 86.3
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1244.2 704 87.1
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1243.8 707 86.8
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1243.8 707 87.1
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1243.8 707 87.0
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1242.6 707 87.1
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1241.9 708 87.3
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1239.9 709 87.0
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1239.2 707 87.0
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1239.2 708 86.9
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1238.8 707 86.7
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1238.8 707 86.4
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1236.5 707 85.7
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1236.1 708 85.9
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1235.3 707 86.6
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1234.2 707 86.8
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1234.2 707 86.4
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1233.4 707 85.6
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1233.4 707 85.7
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1233.4 707 85.9
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1233.4 707 85.7
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1233.0 707 86.3
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1233.0 708 86.0
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1232.2 707 86.6
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1231.5 709 85.8
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1231.5 707 86.1
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1231.5 707 86.0
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1231.1 707 85.4
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1230.7 709 85.8
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1229.9 707 86.0
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1229.9 707 86.1
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1229.5 707 85.4
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1229.5 707 85.9
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1228.8 707 85.4
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1228.4 708 85.3
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1227.6 707 85.7
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 707 86.0
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 734 83.7
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1226.1 707 85.4
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1225.7 707 85.3
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1225.3 709 85.6
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1224.5 707 85.1
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1224.2 708 85.0
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1223.8 706 85.6
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1223.4 710 84.9
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1223.0 710 84.9
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1222.2 711 84.8
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1221.5 707 85.7
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1219.9 709 84.9
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1219.9 710 85.8
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1219.5 710 85.6
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1218.8 710 85.8
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1218.0 705 85.2
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1217.6 729 84.1
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1217.6 729 84.1
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1216.1 713 84.7
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1215.7 709 85.5
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1215.7 708 85.0
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1214.1 706 85.0
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1213.4 708 84.9
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1213.0 708 84.7
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1213.0 707 84.4
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1212.6 709 84.8
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1212.6 709 84.9
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1210.7 707 84.4
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1209.9 708 84.3
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1209.5 708 84.6
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1209.1 707 84.3
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1208.7 708 84.5
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1207.6 707 84.6
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1206.4 707 84.2
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1206.0 707 84.2
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1206.0 707 84.2
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1205.7 702 85.2
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1205.3 707 84.0
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1204.5 707 83.9
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1203.7 708 84.0
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1201.8 708 83.9
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1201.4 707 83.7
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1201.0 707 84.3
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1198.7 708 84.3
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1195.3 708 83.3
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1191.8 707 83.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1189.5 771 78.5
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1187.6 714 82.5
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1186.0 707 83.2
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1183.3 707 84.4
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1183.3 693 84.8
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1181.4 707 82.7
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1181.0 788 76.9
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1177.5 723 81.6
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1167.9 743 79.4
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1155.2 703 81.1
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1152.9 700 83.9
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1152.5 674 84.6
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1151.3 713 80.9
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1148.3 711 80.6
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1141.3 639 88.3
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1127.9 714 79.0
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1119.8 712 79.6
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1080.9 709 74.6
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1075.5 704 75.1
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1075.1 654 80.4
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 8.3e-310 1066.6 584 88.9
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 2.3e-307 1058.5 601 86.2
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 3.0e-307 1058.1 707 73.3
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 5.8e-303 1043.9 707 72.7
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 2.9e-294 1015.0 635 78.7
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 5.9e-231 804.7 634 63.4
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.0e-219 767.3 664 59.6
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.8e-211 740.0 509 76.6
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 3.1e-203 712.6 616 61.0
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 2.7e-199 699.5 453 77.5
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 3.5e-199 699.1 464 76.5
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.0e-198 697.6 398 86.9
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.9e-198 695.7 398 86.7
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 2.8e-188 662.9 489 71.2
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 7.4e-133 478.8 263 88.2
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.3e-116 424.9 395 58.5
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 8.0e-95 352.4 218 82.1
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.3e-81 308.5 578 36.3
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 5.6e-72 276.6 143 93.0
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.9e-60 237.7 122 91.8
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.0e-57 229.2 170 71.2
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 1.9e-40 171.8 273 38.1
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.4e-38 165.6 84 91.7
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.5e-35 154.8 98 73.5
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 7.2e-35 153.3 80 90.0
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 1.7e-28 132.1 72 86.1
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.4e-25 122.5 85 68.2
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 1.8e-25 122.1 71 81.7
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 3.1e-22 111.3 69 73.9
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 2.2e-20 105.1 127 48.8
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.0e-17 96.3 72 70.8
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.0e-17 96.3 70 68.6
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.0e-17 96.3 222 33.8
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 8.8e-17 93.2 75 62.7
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 7.4e-16 90.1 75 60.0
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 9.7e-16 89.7 85 54.1
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 9.1e-14 83.2 47 85.1
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 1.6e-13 82.4 85 50.6
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 1.3e-12 79.3 49 81.6
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 5.0e-12 77.4 61 62.3
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 1.5e-11 75.9 69 55.1
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 8.0e-10 70.1 43 69.8
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 1.4e-09 69.3 41 80.5
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.4e-08 64.3 47 61.7
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 5.7e-08 63.9 33 87.9
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.3e-07 62.8 46 60.9
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.7e-07 62.4 45 62.2
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.8e-06 58.9 52 50.0


User provided reference genes

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