Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 9.7e-127 456.8 232 100.0
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 9.5e-90 334.0 197 82.2
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 9.5e-90 334.0 183 89.1
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 3.6e-89 332.0 186 86.6
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 8.0e-89 330.9 189 83.6
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.0e-88 330.5 239 73.2
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 1.4e-88 330.1 202 81.2
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 3.0e-88 328.9 232 75.0
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 4.0e-88 328.6 185 84.9
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 6.8e-88 327.8 211 79.1
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 6.8e-88 327.8 222 73.9
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.5e-87 326.6 193 82.4
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.5e-87 326.6 182 87.4
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.0e-87 326.2 181 87.8
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 3.4e-87 325.5 229 72.9
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 3.4e-87 325.5 220 74.1
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 4.4e-87 325.1 180 87.2
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 5.7e-87 324.7 230 72.2
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 5.7e-87 324.7 235 73.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 5.7e-87 324.7 244 72.5
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 7.5e-87 324.3 209 78.5
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 9.8e-87 323.9 182 86.3
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 9.8e-87 323.9 185 84.3
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.3e-86 323.6 236 72.5
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.7e-86 323.2 241 72.6
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.7e-86 323.2 234 73.5
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 2.2e-86 322.8 178 88.2
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 2.2e-86 322.8 188 83.0
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.9e-86 322.4 184 87.5
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.9e-86 322.4 220 74.5
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.9e-86 322.4 220 74.5
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.7e-86 322.0 212 75.9
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.7e-86 322.0 221 75.6
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 4.9e-86 321.6 219 74.9
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 4.9e-86 321.6 238 72.3
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 6.4e-86 321.2 181 85.1
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 6.4e-86 321.2 178 87.6
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.1e-85 320.5 184 84.2
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.1e-85 320.5 219 76.3
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.1e-85 320.5 238 72.3
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.1e-85 320.5 186 85.5
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 1.1e-85 320.5 188 83.0
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.1e-85 320.5 185 82.7
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.4e-85 320.1 219 76.7
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 1.4e-85 320.1 236 72.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.4e-85 320.1 236 72.5
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.4e-85 320.1 180 85.6
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 1.4e-85 320.1 183 84.2
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.8e-85 319.7 232 72.0
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.4e-85 319.3 191 80.6
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 2.4e-85 319.3 235 70.6
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.4e-85 319.3 241 69.7
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 3.2e-85 318.9 223 76.7
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 3.2e-85 318.9 230 72.2
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 4.1e-85 318.5 223 76.2
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 4.1e-85 318.5 204 78.9
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 4.1e-85 318.5 187 83.4
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 4.1e-85 318.5 232 70.3
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 4.1e-85 318.5 183 84.7
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 5.4e-85 318.2 232 71.6
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 5.4e-85 318.2 238 72.3
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 5.4e-85 318.2 181 86.7
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 5.4e-85 318.2 183 86.3
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 5.4e-85 318.2 230 72.6
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 7.0e-85 317.8 235 70.6
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 7.0e-85 317.8 232 71.1
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 7.0e-85 317.8 236 71.2
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 9.2e-85 317.4 200 77.5
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 9.2e-85 317.4 237 72.6
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 1.2e-84 317.0 206 78.2
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.2e-84 317.0 237 72.6
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.2e-84 317.0 236 70.8
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 2.0e-84 316.2 221 73.3
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.0e-84 316.2 224 72.3
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 4.6e-84 315.1 231 72.7
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 5.9e-84 314.7 236 70.3
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 7.8e-84 314.3 180 86.1
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.0e-83 313.9 198 79.3
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.3e-83 313.5 211 75.8
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 1.7e-83 313.2 221 74.7
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 1.7e-83 313.2 221 74.7
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.7e-83 313.2 242 67.4
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 2.3e-83 312.8 184 81.0
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 3.0e-83 312.4 220 74.5
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 3.0e-83 312.4 228 73.2
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 3.9e-83 312.0 200 78.5
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 5.0e-83 311.6 237 67.9
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 8.6e-83 310.8 234 68.8
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 8.6e-83 310.8 180 82.8
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.1e-82 310.5 227 71.4
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.3e-82 308.9 217 70.5
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 5.6e-82 308.1 206 75.2
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 7.3e-82 307.8 206 74.3
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.6e-81 306.6 178 83.1
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.1e-81 306.2 182 78.6
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 2.8e-81 305.8 182 79.1
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 2.8e-81 305.8 238 69.3
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 4.7e-81 305.1 205 76.1
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 6.2e-81 304.7 223 72.2
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 1.1e-80 303.9 169 88.2
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.1e-80 303.9 173 82.7
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.4e-80 303.5 234 69.2
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.1e-80 302.4 190 76.8
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 6.8e-80 301.2 184 78.8
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 2.6e-79 299.3 180 80.6
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 7.5e-79 297.7 195 76.9
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 1.4e-77 293.5 171 78.9
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.7e-73 278.5 161 84.5
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 5.2e-72 275.0 236 64.0
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 5.2e-72 275.0 180 71.7
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.3e-70 270.4 276 55.4
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 2.2e-70 269.6 210 65.7
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.1e-69 267.3 220 66.8
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 7.1e-69 264.6 152 82.2
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 7.8e-68 261.2 184 72.3
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.0e-67 259.2 191 67.5
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 1.2e-65 253.8 186 63.4
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.6e-65 253.4 182 69.8
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 1.1e-61 240.7 165 67.9
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 9.6e-58 227.6 122 90.2
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.4e-56 223.8 211 59.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 4.0e-48 195.7 135 72.6
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.8e-46 189.1 132 71.2
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.2e-44 184.1 164 61.0
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 3.5e-44 182.6 112 82.1
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.5e-42 177.2 119 69.7
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 1.6e-41 173.7 151 62.3
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 1.4e-40 170.6 104 80.8
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 1.8e-40 170.2 104 79.8
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 7.6e-39 164.9 102 78.4
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.7e-33 146.0 106 68.9
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.4e-32 144.1 82 87.8
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 3.1e-32 142.9 124 62.1
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 2.0e-31 140.2 78 88.5
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.1e-28 130.2 75 86.7
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 2.1e-28 130.2 151 39.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.3e-27 126.7 71 93.0
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.0e-22 111.3 77 77.9
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.7e-17 94.0 62 69.4
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.8e-16 90.5 92 56.5
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.5e-15 87.4 49 83.7
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 3.3e-10 69.7 78 51.3
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 1.3e-09 67.8 47 66.0
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.7e-09 66.2 42 71.4
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.7e-06 57.4 28 82.1
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.7e-06 57.4 28 82.1
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 3.8e-06 56.2 52 51.9


User provided reference genes

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