Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 2.5e-56 221.9 112 100.0
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 7.9e-50 200.3 112 90.2
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 7.9e-50 200.3 110 90.9
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 5.1e-49 197.6 109 89.9
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 4.3e-48 194.5 109 89.9
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 4.3e-48 194.5 109 89.0
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 9.7e-48 193.4 107 88.8
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 2.2e-47 192.2 112 87.5
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 2.8e-47 191.8 109 87.2
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 2.8e-47 191.8 109 88.1
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 3.7e-47 191.4 112 85.7
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 3.7e-47 191.4 112 85.7
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 4.8e-47 191.0 108 88.0
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 4.8e-47 191.0 112 84.8
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 6.3e-47 190.7 109 86.2
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 6.3e-47 190.7 109 87.2
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 6.3e-47 190.7 112 84.8
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 8.2e-47 190.3 109 87.2
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 8.2e-47 190.3 109 86.2
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 1.1e-46 189.9 109 86.2
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 1.4e-46 189.5 109 86.2
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 1.4e-46 189.5 109 85.3
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 1.8e-46 189.1 112 84.8
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.8e-46 189.1 109 86.2
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 1.8e-46 189.1 109 85.3
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 2.4e-46 188.7 109 84.4
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 2.4e-46 188.7 109 86.2
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 2.4e-46 188.7 112 83.9
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 3.1e-46 188.3 109 82.6
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 3.1e-46 188.3 109 84.4
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 3.1e-46 188.3 109 84.4
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 3.1e-46 188.3 109 86.2
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 3.1e-46 188.3 109 83.5
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 4.1e-46 188.0 109 87.2
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 4.1e-46 188.0 109 85.3
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 5.3e-46 187.6 109 83.5
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 5.3e-46 187.6 109 84.4
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 6.9e-46 187.2 109 83.5
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 6.9e-46 187.2 112 83.0
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 9.0e-46 186.8 109 84.4
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 9.0e-46 186.8 109 84.4
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 9.0e-46 186.8 109 83.5
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 2.0e-45 185.7 112 83.9
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 2.0e-45 185.7 112 83.9
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.0e-45 185.7 109 83.5
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 2.0e-45 185.7 112 83.0
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 2.6e-45 185.3 110 82.7
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 2.6e-45 185.3 112 82.1
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 3.4e-45 184.9 109 85.3
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 7.6e-45 183.7 115 80.9
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 2.2e-44 182.2 109 80.7
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 2.2e-44 182.2 109 80.7
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 2.2e-44 182.2 109 80.7
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 2.2e-44 182.2 109 80.7
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 2.2e-44 182.2 102 87.3
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 2.9e-44 181.8 112 82.1
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 3.8e-44 181.4 109 80.7
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 3.8e-44 181.4 114 80.7
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 3.8e-44 181.4 112 82.1
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 6.5e-44 180.6 106 84.9
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 6.5e-44 180.6 109 81.7
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 6.5e-44 180.6 112 81.2
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 8.5e-44 180.3 109 82.6
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 1.4e-43 179.5 109 79.8
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 1.4e-43 179.5 108 83.3
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.4e-43 179.5 109 78.9
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 1.9e-43 179.1 110 81.8
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 1.9e-43 179.1 108 76.9
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 1.9e-43 179.1 109 77.1
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 1.9e-43 179.1 108 82.4
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 2.5e-43 178.7 109 79.8
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 4.2e-43 177.9 109 81.7
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 4.2e-43 177.9 109 79.8
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 4.2e-43 177.9 109 79.8
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 4.2e-43 177.9 119 78.2
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 7.2e-43 177.2 107 80.4
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 2.7e-42 175.3 109 79.8
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 2.7e-42 175.3 109 80.7
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 2.7e-42 175.3 110 82.7
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 2.7e-42 175.3 114 80.7
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 3.6e-42 174.9 112 78.6
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 3.6e-42 174.9 114 80.7
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 3.6e-42 174.9 108 81.5
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.1e-42 174.1 108 80.6
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.1e-42 174.1 108 80.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.1e-42 174.1 108 80.6
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 7.9e-42 173.7 109 79.8
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.3e-41 172.9 110 77.3
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 1.8e-41 172.6 109 75.2
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 3.9e-41 171.4 130 70.0
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 5.1e-41 171.0 109 77.1
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 5.1e-41 171.0 136 69.1
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 4.3e-40 167.9 98 85.7
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 2.8e-39 165.2 108 74.1
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 2.0e-37 159.1 164 55.5
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 2.0e-37 159.1 164 55.5
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 7.2e-35 150.6 109 72.5
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 4.7e-34 147.9 105 73.3
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 7.9e-34 147.1 108 71.3
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 3.0e-33 145.2 84 83.3
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 4.8e-31 137.9 90 78.9
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.4e-30 136.3 82 86.6
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 3.1e-30 135.2 81 81.5
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 6.9e-30 134.0 110 66.4
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 1.2e-29 133.3 108 62.0
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.2e-26 123.2 81 77.8
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 4.7e-26 121.3 112 54.5
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 3.7e-23 111.7 133 53.4
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 4.5e-21 104.8 56 89.3
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 1.3e-20 103.2 111 50.5
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 8.5e-20 100.5 56 87.5
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 1.0e-17 93.6 59 76.3
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.4e-17 93.2 93 48.4
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 7.5e-16 87.4 55 69.1
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 9.7e-16 87.0 48 85.4
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 2.5e-11 72.4 105 44.8


User provided reference genes

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