Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 5.0e-310 1067.0 569 100.0
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 1.7e-132 477.2 562 50.7
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 2.5e-115 420.2 556 45.0
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 2.7e-114 416.8 562 43.6
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 4.7e-114 416.0 593 44.9
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.7e-111 407.5 541 46.4
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 6.3e-111 405.6 599 45.2
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 1.1e-110 404.8 561 46.5
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 1.1e-110 404.8 562 44.7
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 2.4e-110 403.7 596 45.5
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 9.1e-110 401.7 555 43.8
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 4.2e-107 392.9 562 44.5
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 1.6e-106 391.0 578 48.3
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 1.5e-104 384.4 559 43.8
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 2.0e-104 384.0 556 42.3
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 2.0e-104 384.0 563 44.8
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 2.0e-104 384.0 536 44.8
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 4.4e-104 382.9 532 43.0
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 4.4e-104 382.9 532 43.0
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 5.7e-104 382.5 532 42.9
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 1.3e-103 381.3 517 45.3
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 3.7e-103 379.8 560 43.0
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 8.2e-103 378.6 602 44.2
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 8.2e-103 378.6 644 40.2
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 8.2e-103 378.6 548 44.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.1e-102 378.3 620 39.8
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 2.6e-101 373.6 562 41.3
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 2.6e-101 373.6 568 42.6
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 4.5e-101 372.9 560 42.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.7e-100 370.9 472 47.7
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.2e-100 370.5 538 43.7
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 5.0e-100 369.4 538 43.5
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 6.5e-100 369.0 590 40.2
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 6.5e-100 369.0 565 45.8
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 4.7e-98 362.8 579 40.8
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 8.0e-98 362.1 551 43.2
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 1.8e-97 360.9 640 39.7
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 2.3e-97 360.5 546 42.1
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 2.6e-96 357.1 625 38.1
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 5.7e-96 355.9 596 40.1
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 5.7e-96 355.9 556 41.5
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 7.5e-96 355.5 613 39.5
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 1.3e-95 354.8 608 41.3
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 2.2e-95 354.0 568 44.2
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 6.3e-95 352.4 588 44.2
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 6.3e-95 352.4 439 47.2
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 7.0e-94 349.0 546 41.2
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 1.2e-93 348.2 561 42.4
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 2.0e-93 347.4 530 44.0
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 2.2e-92 344.0 560 41.1
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.2e-92 344.0 593 43.5
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.1e-91 341.7 628 37.6
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 1.6e-90 337.8 556 41.2
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 2.7e-90 337.0 558 40.9
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 4.7e-90 336.3 558 40.9
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 4.7e-90 336.3 572 42.1
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.4e-89 334.7 581 39.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.2e-89 332.8 540 41.3
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 1.2e-88 331.6 472 45.1
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.2e-87 327.4 569 40.4
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 1.2e-85 321.6 549 39.9
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 5.9e-85 319.3 571 40.3
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 7.7e-85 318.9 627 40.0
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 2.3e-84 317.4 555 39.5
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.9e-84 317.0 555 42.2
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 8.6e-84 315.5 578 39.3
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.3e-83 313.5 538 40.0
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 4.2e-83 313.2 577 38.3
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 1.2e-82 311.6 517 40.2
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.0e-81 308.5 417 46.0
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.4e-81 308.1 524 41.8
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 1.4e-78 298.1 610 35.7
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.4e-78 298.1 562 39.1
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 4.1e-78 296.6 547 39.1
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 2.0e-77 294.3 554 38.8
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 1.0e-76 292.0 572 38.5
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.5e-75 288.1 573 38.6
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 3.3e-75 287.0 534 39.7
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.2e-74 285.0 356 47.5
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 3.6e-74 283.5 568 37.0
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 3.6e-74 283.5 568 37.0
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 1.4e-73 281.6 548 41.8
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 3.0e-73 280.4 548 37.6
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 6.8e-73 279.3 564 39.5
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 3.4e-72 276.9 578 35.6
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 6.4e-71 272.7 548 35.0
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 8.3e-71 272.3 571 37.5
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 8.3e-71 272.3 571 37.5
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 8.3e-71 272.3 701 32.1
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 4.6e-69 266.5 398 44.2
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.7e-68 264.6 537 37.8
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 1.9e-67 261.2 572 36.4
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 5.6e-67 259.6 542 37.6
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 7.3e-67 259.2 553 35.3
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 1.5e-64 251.5 465 39.1
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 1.5e-64 251.5 465 39.1
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 8.3e-63 245.7 572 35.3
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 8.3e-63 245.7 572 35.3
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 1.4e-62 245.0 389 40.6
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 1.9e-62 244.6 463 38.0
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 2.7e-61 240.7 569 35.0
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.0e-60 238.8 569 34.8
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 1.3e-60 238.4 694 30.4
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 9.5e-59 232.3 573 33.7
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 1.4e-57 228.4 459 36.4
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 5.8e-56 223.0 295 47.1
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 9.9e-56 222.2 534 34.6
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 7.1e-54 216.1 478 36.0
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.7e-53 214.2 450 36.0
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 3.0e-52 210.7 564 33.3
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.8e-49 199.5 465 37.4
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.8e-49 199.5 465 37.4
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 3.4e-48 197.2 196 55.6
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 7.6e-48 196.1 482 33.8
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 6.0e-45 186.4 157 61.8
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 4.3e-43 180.3 161 60.2
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 4.0e-41 173.7 421 34.7
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.7e-39 168.3 270 40.0
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 3.8e-39 167.2 275 40.4
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 8.4e-39 166.0 423 31.7
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 9.3e-38 162.5 126 65.1
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 4.8e-34 150.2 370 33.2
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 1.1e-33 149.1 403 33.0
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 5.3e-33 146.7 391 30.9
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.9e-31 141.0 433 32.8
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 8.4e-31 139.4 533 28.7
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.8e-28 131.7 283 39.2
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 3.9e-28 130.6 273 35.9
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 4.8e-26 123.6 166 47.6
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 1.1e-25 122.5 581 27.9
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.1e-25 122.5 388 31.2
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.9e-23 114.4 383 29.5
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.5e-16 92.0 85 57.6
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.8e-09 68.6 67 50.7
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 2.6e-08 64.7 224 29.5
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 3.8e-07 60.8 97 38.1
Gorai.010G062100 Gossypium raimondii HOM05D000415 ORTHO05D019988 8.5e-07 59.7 38 68.4


User provided reference genes

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