Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.1e-233 812.0 406 100.0
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 2.2e-182 642.5 427 77.5
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 2.4e-181 639.0 368 84.0
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 4.1e-181 638.3 383 81.7
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.6e-180 636.3 384 81.5
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 4.5e-180 634.8 359 85.2
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 7.8e-180 634.0 409 78.0
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.3e-179 633.3 374 82.9
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.9e-179 632.1 357 85.4
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 3.8e-179 631.7 375 82.7
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 5.0e-179 631.3 370 83.5
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 5.0e-179 631.3 389 80.5
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 6.6e-179 630.9 376 82.7
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 1.9e-178 629.4 401 78.8
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 3.3e-178 628.6 376 82.4
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 5.6e-178 627.9 400 79.0
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 9.5e-178 627.1 411 77.6
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 1.2e-177 626.7 407 77.9
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.2e-177 626.7 395 78.2
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 1.2e-177 626.7 395 78.2
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 2.1e-177 625.9 414 75.6
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 3.6e-177 625.2 389 79.7
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 8.0e-177 624.0 400 77.5
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 8.0e-177 624.0 404 77.2
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.0e-176 623.6 361 83.1
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 1.0e-176 623.6 391 79.3
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.4e-176 623.2 358 85.2
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.4e-176 623.2 396 78.8
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 1.8e-176 622.9 357 82.6
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.8e-176 622.9 376 81.4
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 5.2e-176 621.3 396 79.8
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 6.8e-176 620.9 375 81.3
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.5e-175 619.8 363 84.0
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 2.6e-175 619.0 382 80.9
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.6e-175 619.0 362 81.5
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 3.4e-175 618.6 404 77.0
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 3.4e-175 618.6 373 81.8
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 4.4e-175 618.2 401 79.1
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 5.8e-175 617.8 435 73.1
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 7.5e-175 617.5 383 79.4
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.3e-174 616.7 358 84.1
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.7e-174 616.3 413 76.0
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 2.2e-174 615.9 356 82.3
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 2.2e-174 615.9 383 79.4
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.9e-174 615.5 358 81.3
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 2.9e-174 615.5 358 83.8
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 8.3e-174 614.0 358 81.0
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 8.3e-174 614.0 358 81.0
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 8.3e-174 614.0 358 81.0
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 8.3e-174 614.0 394 79.2
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 1.4e-173 613.2 398 76.4
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 7.0e-173 610.9 356 81.2
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 2.0e-172 609.4 373 81.2
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 2.0e-172 609.4 413 74.8
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 7.8e-172 607.4 361 80.3
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 7.8e-172 607.4 358 81.8
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 2.3e-171 605.9 365 84.1
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 3.9e-171 605.1 367 80.7
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 6.6e-171 604.4 412 74.8
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 2.5e-170 602.4 373 79.9
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 9.5e-170 600.5 360 81.7
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 2.1e-169 599.4 389 78.7
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.1e-168 597.0 379 80.7
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.5e-167 593.2 377 80.1
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 2.0e-167 592.8 365 81.4
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 3.4e-167 592.0 401 74.3
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.8e-167 591.3 365 81.1
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 7.5e-167 590.9 383 77.8
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.3e-166 590.1 373 79.9
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 4.9e-166 588.2 394 76.9
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 8.3e-166 587.4 360 80.3
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 2.4e-165 585.9 440 69.1
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.2e-164 583.6 394 75.1
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 1.6e-164 583.2 357 79.0
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 2.7e-164 582.4 390 76.4
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 7.8e-164 580.9 414 72.7
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 1.0e-163 580.5 411 72.5
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 1.0e-163 580.5 373 77.7
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.3e-163 580.1 361 78.9
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.1e-162 577.0 409 72.4
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 1.1e-162 577.0 369 77.2
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 1.1e-162 577.0 394 74.9
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.5e-162 576.6 381 75.9
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 3.3e-162 575.5 499 61.5
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 9.5e-162 573.9 425 71.8
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 9.5e-162 573.9 368 76.9
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 3.6e-161 572.0 358 77.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 3.6e-161 572.0 411 71.3
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 1.1e-160 570.5 382 76.2
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 8.9e-160 567.4 354 77.4
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 1.2e-159 567.0 353 79.0
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.5e-159 566.6 358 77.1
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 7.5e-159 564.3 359 76.9
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 1.3e-158 563.5 350 83.4
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 2.9e-158 562.4 373 73.5
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.1e-157 560.5 336 84.2
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.4e-157 560.1 327 82.0
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.4e-157 560.1 327 82.0
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.9e-157 559.7 355 74.9
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 8.6e-155 550.8 470 63.2
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.2e-153 547.0 405 69.6
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.1e-148 529.6 532 54.9
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 5.6e-146 521.5 359 71.3
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 2.1e-145 519.6 359 68.2
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.1e-144 517.3 564 52.5
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.5e-143 513.5 359 71.0
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 9.6e-138 494.2 404 65.6
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 5.4e-133 478.4 492 54.5
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 6.9e-120 434.9 334 67.4
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 7.6e-119 431.4 389 59.6
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.0e-115 421.0 355 58.9
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 4.5e-111 405.6 209 90.9
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.8e-107 393.7 203 92.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 5.1e-107 392.1 409 50.1
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 6.7e-107 391.7 379 54.1
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 9.4e-77 291.6 298 49.3
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.6e-58 230.3 352 38.4
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 2.6e-58 230.3 114 93.9
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.9e-56 224.2 122 84.4
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 4.9e-49 199.5 181 60.2
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 1.1e-40 171.8 111 74.8
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 2.7e-39 167.2 211 47.9
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 6.0e-31 139.4 68 92.6
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 5.1e-30 136.3 103 63.1
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.6e-28 130.2 75 85.3
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.7e-25 121.3 57 91.2
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.9e-24 117.9 56 89.3
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.4e-19 101.7 80 62.5
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.4e-19 100.9 53 84.9
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.9e-16 91.3 57 75.4
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 1.4e-11 75.1 61 63.9
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 9.0e-11 72.4 43 79.1
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 1.2e-10 72.0 70 58.6
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.3e-09 68.6 38 76.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 7.1e-08 62.8 36 83.3
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.7e-07 60.8 60 50.0


User provided reference genes

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