Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 3670.9 1955 100.0
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2655.9 1971 75.1
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2433.3 1956 70.2
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2340.5 1843 68.5
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2290.8 1957 65.8
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2255.7 1947 64.4
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2246.1 1942 65.4
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2224.9 1910 65.1
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2224.5 1960 64.3
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2222.2 1946 64.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2214.5 1952 63.9
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2201.0 1951 64.5
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2198.7 1807 65.9
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2195.2 1943 63.6
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2189.1 1894 64.4
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2185.6 1943 63.7
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2183.3 1953 63.0
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2172.5 1842 64.1
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2171.7 1890 64.0
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2166.0 1951 63.0
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2165.2 1882 64.0
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2164.8 1946 63.1
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2164.8 1843 64.2
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2164.4 1810 64.5
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2158.3 1887 64.8
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2152.1 1855 64.9
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2145.2 1942 63.0
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2142.5 1842 64.7
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2141.3 1967 62.3
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2140.5 1941 61.6
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2133.6 1852 63.3
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2130.5 1853 64.0
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2128.2 1928 63.8
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2127.1 1934 62.9
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2125.1 1950 63.0
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2121.3 1936 63.0
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2119.0 1941 61.9
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2114.7 1936 62.8
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2105.1 1944 62.0
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2102.8 1833 63.5
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2102.0 1839 63.3
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2100.1 1857 63.3
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2100.1 1841 62.5
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2097.8 1948 62.1
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2092.4 1944 62.5
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2092.0 1949 61.8
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2085.1 1952 60.9
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2083.9 1841 62.0
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2082.8 1844 62.3
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2081.6 1839 62.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2080.8 1909 62.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2080.4 1803 63.6
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2080.1 1845 62.4
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2072.4 1948 60.9
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2070.0 1952 61.1
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2070.0 1833 63.0
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2064.7 1949 61.5
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2061.6 1938 62.0
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2059.6 1947 61.2
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2055.8 1811 62.9
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2055.4 1952 60.9
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2047.7 1945 61.5
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2043.1 1832 61.7
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2033.8 1841 61.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2030.4 1833 61.3
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2022.7 1940 60.3
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2015.7 1940 60.3
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2013.8 1846 61.3
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2012.7 1832 60.9
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2009.2 1864 60.5
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2007.3 1936 60.4
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1998.0 1949 59.8
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1984.5 1844 61.1
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1982.6 1840 60.3
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1981.5 1700 64.4
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1972.6 1782 63.2
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1967.6 1888 59.9
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1959.1 1954 58.7
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1949.9 1855 59.2
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1935.2 1973 58.9
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1926.8 1952 58.3
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1905.6 1835 58.9
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1881.3 1883 57.9
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1872.1 1947 56.8
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1862.8 1745 60.1
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1843.2 1842 56.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1840.9 1884 57.1
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1803.5 1931 55.2
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1758.0 1913 52.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1746.1 1892 53.0
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1734.2 1899 53.0
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1733.0 1899 53.0
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1724.9 1869 53.7
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1722.2 1899 52.8
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1717.6 1920 52.6
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1713.0 1857 54.8
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1708.3 1894 52.5
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1701.4 1896 52.4
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1701.4 1889 51.9
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1683.3 1889 52.0
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1672.1 1939 52.1
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1671.8 1951 52.0
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1671.0 1849 52.5
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1669.1 1946 52.0
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1668.7 1908 51.5
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1668.7 1908 51.5
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1627.1 1851 51.8
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1560.4 1230 69.8
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1485.3 1247 65.0
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1478.0 1490 58.8
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1456.8 1840 48.0
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1451.0 1908 47.1
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1451.0 1908 47.1
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1449.5 1245 66.2
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1437.2 1957 47.3
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1427.2 1879 48.4
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1417.9 1882 47.0
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1347.0 1443 55.2
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1231.5 1085 65.2
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1200.3 1520 49.4
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1194.5 1787 44.3
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1169.8 927 68.1
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1115.9 1031 63.0
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 4.0e-306 1055.8 1341 51.8
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 3.3e-292 1009.6 861 64.8
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 1.3e-280 971.1 1461 45.3
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.8e-267 926.0 844 63.3
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.4e-263 914.4 1993 36.7
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.2e-257 894.8 797 63.0
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.2e-251 872.5 1853 35.3
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.0e-245 853.6 848 55.8
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.7e-190 670.2 603 63.0
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 3.0e-184 651.0 646 55.1
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.1e-178 632.5 657 53.9
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 5.6e-167 593.6 497 63.0
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 4.0e-165 587.4 718 49.3
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 8.4e-155 553.1 621 52.3
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.4e-154 550.4 439 70.6
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.1e-138 496.9 537 57.9
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.2e-131 475.3 537 55.7
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.2e-115 422.2 421 56.8
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 2.9e-107 395.2 457 45.7
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.0e-100 372.5 464 48.9
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.8e-78 298.9 655 34.2
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 7.8e-76 290.8 2099 22.8
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.3e-75 290.0 870 31.5
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.6e-71 275.8 225 67.6
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 5.7e-71 274.6 450 42.4
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 5.7e-71 274.6 474 38.6
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.9e-62 245.7 198 68.7
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.1e-61 243.8 405 40.2
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 3.2e-61 242.3 161 73.9
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.9e-42 179.9 227 53.3
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 4.7e-41 175.3 204 48.0
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.3e-30 140.6 186 60.2
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 7.9e-20 104.8 250 33.6
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 5.3e-16 92.0 106 50.9
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-13 84.0 160 36.9
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 7.1e-13 81.6 80 51.2
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 3.0e-11 76.3 60 60.0
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.5e-10 73.9 48 64.6
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 3.3e-10 72.8 72 55.6
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 9.7e-10 71.2 33 87.9
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 5.9e-07 62.0 52 51.9


User provided reference genes

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