Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 5.9e-161 570.9 297 100.0
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.7e-160 569.3 297 99.7
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.8e-133 479.6 301 83.7
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 2.6e-132 475.7 304 81.6
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 6.4e-131 471.1 300 83.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 6.0e-129 464.5 303 82.2
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 3.9e-128 461.8 302 80.1
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 5.0e-128 461.5 301 80.1
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 6.6e-128 461.1 301 80.4
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.5e-127 459.9 302 79.8
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.5e-127 459.9 304 78.3
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 3.3e-127 458.8 302 80.5
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 4.3e-127 458.4 302 79.5
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 5.6e-127 458.0 304 79.3
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 7.3e-127 457.6 304 79.6
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 9.5e-127 457.2 304 79.3
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 9.5e-127 457.2 304 79.3
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 1.6e-126 456.4 301 79.7
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.6e-126 456.4 298 79.9
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 1.6e-126 456.4 302 80.1
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 2.1e-126 456.1 304 79.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 2.1e-126 456.1 299 80.3
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 2.8e-126 455.7 302 78.5
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 3.6e-126 455.3 304 77.3
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 4.7e-126 454.9 302 79.1
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 8.0e-126 454.1 300 78.7
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 8.0e-126 454.1 300 78.7
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 8.0e-126 454.1 304 79.3
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.1e-125 453.8 300 79.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.8e-125 453.0 304 78.9
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 3.1e-125 452.2 300 78.7
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 4.0e-125 451.8 301 78.1
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 6.8e-125 451.1 301 79.1
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 8.9e-125 450.7 299 79.3
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.5e-124 449.9 301 76.7
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.5e-124 449.9 304 77.3
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.0e-124 449.5 301 78.7
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.4e-124 448.7 300 78.7
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 4.4e-124 448.4 302 77.2
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 5.8e-124 448.0 303 77.6
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 5.8e-124 448.0 302 78.1
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.3e-123 446.8 301 77.1
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 2.2e-123 446.0 298 80.2
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 2.2e-123 446.0 304 77.6
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 2.9e-123 445.7 299 77.9
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 2.9e-123 445.7 303 77.9
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 6.4e-123 444.5 293 80.2
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 6.4e-123 444.5 300 78.0
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.1e-122 443.7 305 77.0
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 2.4e-122 442.6 301 77.7
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.4e-122 442.6 300 78.3
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.2e-122 442.2 297 78.8
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 9.2e-122 440.7 305 77.7
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.2e-121 440.3 300 76.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.2e-121 440.3 297 76.8
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 1.6e-121 439.9 303 75.9
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 2.1e-121 439.5 302 77.5
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 2.7e-121 439.1 305 76.4
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 7.8e-121 437.6 299 78.3
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 7.8e-121 437.6 303 75.2
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 1.0e-120 437.2 301 75.4
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.0e-120 437.2 302 77.8
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.0e-120 437.2 301 75.7
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 1.3e-120 436.8 297 78.1
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 3.9e-120 435.3 306 75.2
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 3.9e-120 435.3 306 75.2
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 3.9e-120 435.3 306 75.2
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 3.9e-120 435.3 303 75.9
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 5.1e-120 434.9 298 76.2
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 5.1e-120 434.9 297 77.1
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 5.1e-120 434.9 303 76.6
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 5.1e-120 434.9 303 76.6
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 6.6e-120 434.5 302 76.5
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 8.6e-120 434.1 284 80.3
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 8.6e-120 434.1 304 74.0
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.9e-119 433.0 304 74.0
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 2.5e-119 432.6 301 74.8
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 3.3e-119 432.2 302 74.8
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 5.6e-119 431.4 303 76.2
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 7.3e-119 431.0 302 74.8
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 9.5e-119 430.6 303 74.9
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.1e-118 429.5 297 75.8
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 2.8e-118 429.1 300 74.3
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.8e-118 429.1 304 73.7
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.6e-118 428.7 298 75.2
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.8e-117 426.4 300 74.0
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.8e-117 426.4 302 73.8
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 6.8e-117 424.5 299 74.2
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 6.8e-117 424.5 295 75.6
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 6.8e-117 424.5 298 74.5
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 8.9e-117 424.1 297 75.4
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.2e-116 423.7 297 74.7
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 3.4e-116 422.2 301 73.4
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 5.8e-116 421.4 303 72.6
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 7.5e-116 421.0 299 73.6
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 7.5e-116 421.0 297 74.1
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.7e-115 419.9 301 72.4
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 6.4e-115 417.9 301 72.1
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 3.2e-114 415.6 301 73.1
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 2.7e-113 412.5 301 71.1
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 2.7e-113 412.5 301 70.8
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 4.6e-113 411.8 299 71.9
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 4.6e-113 411.8 299 71.9
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 4.6e-113 411.8 299 71.9
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 6.0e-113 411.4 294 74.1
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 7.8e-113 411.0 303 72.6
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.7e-112 409.8 302 71.9
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 3.3e-111 405.6 302 71.2
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.4e-109 400.2 303 71.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 3.1e-109 399.1 298 68.8
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 6.0e-105 384.8 312 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 6.2e-102 374.8 294 69.0
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.8e-101 373.2 278 71.9
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 4.0e-101 372.1 301 68.8
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 9.9e-100 367.5 297 65.7
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.8e-93 346.7 286 67.1
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 2.6e-92 342.8 324 59.6
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 9.3e-90 334.3 301 58.5
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.6e-86 323.6 195 80.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.7e-83 313.5 247 69.6
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 2.7e-81 306.2 247 66.4
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 1.3e-80 303.9 293 57.3
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.3e-79 299.3 298 54.0
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.3e-78 297.4 298 57.0
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 2.0e-76 290.0 297 59.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 1.1e-69 267.7 294 52.4
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 5.9e-68 261.9 134 94.0
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.1e-61 241.1 197 68.5
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.0e-55 220.3 271 51.3
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 3.1e-53 213.0 204 58.3
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 5.0e-51 205.7 191 60.7
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 6.1e-49 198.7 189 61.9
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 3.9e-48 196.1 305 43.6
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.7e-46 190.7 289 43.9
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-44 184.5 189 57.1
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.2e-43 180.3 164 65.2
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 2.7e-41 173.3 197 49.7
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.5e-39 167.5 223 48.0
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 9.7e-39 164.9 110 76.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.0e-36 157.1 104 73.1
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.7e-30 137.5 87 73.6
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 3.1e-29 133.3 182 45.1
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 4.7e-25 119.4 260 38.1
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 3.7e-22 109.8 58 86.2
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.1e-21 108.2 58 84.5
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 5.9e-20 102.4 61 77.0
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.7e-19 100.9 297 32.0
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 2.9e-19 100.1 297 31.6
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.5e-18 97.8 59 76.3
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 2.1e-17 94.0 141 49.6
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 3.0e-11 73.6 114 43.9
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 5.0e-11 72.8 96 55.2
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 7.3e-10 68.9 115 40.9
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 3.1e-08 63.5 78 53.8
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 8.9e-08 62.0 97 43.3
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 3.7e-06 56.6 35 80.0
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 3.7e-06 56.6 138 39.1


User provided reference genes

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