Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G034470 Cucumis sativus L. HOM05D005330 ORTHO05D006489 1.3e-168 596.3 305 100.0
MELO3C024354.2 Cucumis melo HOM05D005330 ORTHO05D006489 1.1e-157 560.1 289 98.6
ClCG09G000970 Citrullus lanatus HOM05D005330 ORTHO05D006489 6.9e-149 530.8 288 93.1
Sed0026793 Sechium edule HOM05D005330 ORTHO05D006489 9.4e-138 493.8 288 85.8
Sed0005660 Sechium edule HOM05D005330 ORTHO05D006489 5.5e-130 468.0 289 81.3
Cfa003530 Carpinus fangiana HOM05D005330 ORTHO05D006489 3.4e-111 405.6 294 68.7
CiPaw.01G218300 Carya illinoinensis HOM05D005330 ORTHO05D006489 2.0e-108 396.4 292 67.8
Lalb_Chr04g0263541 Lupinus albus HOM05D005330 ORTHO05D006489 7.8e-108 394.4 290 66.9
TWI79G1442 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 4.0e-104 382.1 290 64.8
Eucgr.F04419 Eucalyptus grandis HOM05D005330 ORTHO05D006489 5.2e-104 381.7 297 65.3
Manes.11G019800 Manihot esculenta HOM05D005330 ORTHO05D006489 6.8e-104 381.3 298 65.1
Cpa.g.sc25.125 Carica papaya HOM05D005330 ORTHO05D006489 8.9e-104 380.9 296 66.6
Gohir.A10G053500 Gossypium hirsutum HOM05D005330 ORTHO05D006489 2.6e-103 379.4 290 64.5
PGR119G1300 Punica granatum HOM05D005330 ORTHO05D006489 2.6e-103 379.4 298 62.8
GSVIVG01016752001 Vitis vinifera HOM05D005330 ORTHO05D006489 3.4e-103 379.0 293 62.1
Phvul.010G129300 Phaseolus vulgaris HOM05D005330 ORTHO05D006489 4.4e-103 378.6 291 64.6
Gohir.D10G055300 Gossypium hirsutum HOM05D005330 ORTHO05D006489 5.8e-103 378.3 290 64.5
Gorai.011G059000 Gossypium raimondii HOM05D005330 ORTHO05D006489 5.8e-103 378.3 290 64.5
TWI31G1192 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 5.8e-103 378.3 298 63.4
Thecc.06G120800 Theobroma cacao HOM05D005330 ORTHO05D006489 2.2e-102 376.3 290 65.2
Lj3g0015373 Lotus japonicus HOM05D005330 ORTHO05D006489 2.9e-102 375.9 289 62.3
Haze_16035 Corylus avellana HOM05D005330 ORTHO05D006489 4.9e-102 375.2 354 57.6
Glyma.18G149800 Glycine max HOM05D005330 ORTHO05D006489 1.4e-101 373.6 291 63.2
QL05p004250 Quercus lobata HOM05D005330 ORTHO05D006489 1.4e-101 373.6 317 60.6
arahy.Tifrunner.gnm1.ann1.K577WU Arachis hypogaea HOM05D005330 ORTHO05D006489 1.9e-101 373.2 291 62.2
arahy.Tifrunner.gnm1.ann1.RX87J0 Arachis hypogaea HOM05D005330 ORTHO05D006489 7.0e-101 371.3 291 61.9
Actinidia32189 Actinidia chinensis HOM05D005330 ORTHO05D006489 1.6e-100 370.2 288 60.1
Sabra03G0038500 Salix brachista HOM05D005330 ORTHO05D006489 2.7e-100 369.4 287 63.8
Prupe.3G040200 Prunus persica HOM05D005330 ORTHO05D006489 6.0e-100 368.2 292 63.7
Glyma.16G008300 Glycine max HOM05D005330 ORTHO05D006489 7.8e-100 367.9 289 61.2
Medtr8g020850 Medicago truncatula HOM05D005330 ORTHO05D006489 7.8e-100 367.9 289 60.9
Potri.003G065500 Populus trichocarpa HOM05D005330 ORTHO05D006489 1.3e-99 367.1 287 62.4
vmacro15037 Vaccinium macrocarpon HOM05D005330 ORTHO05D006489 3.9e-99 365.5 293 60.4
Cc04_g01320 Coffea canephora HOM05D005330 ORTHO05D006489 8.6e-99 364.4 298 61.4
VMungo0331G1542 Vigna mungo HOM05D005330 ORTHO05D006489 8.6e-99 364.4 292 62.0
Dinv20432 Davidia involucrata HOM05D005330 ORTHO05D006489 3.6e-97 359.0 293 60.8
DCAR_022693 Daucus carota HOM05D005330 ORTHO05D006489 6.2e-97 358.2 287 59.6
Hma1.2p1_0686F.1_g203410 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 3.1e-96 355.9 291 61.9
Atru.chr1.3994 Acer truncatum HOM05D005330 ORTHO05D006489 2.6e-95 352.8 294 61.9
Hund05737 Selenicereus undatus HOM05D005330 ORTHO05D006489 7.5e-95 351.3 297 59.6
HanXRQChr12g0360301 Helianthus annuus HOM05D005330 ORTHO05D006489 2.9e-94 349.4 293 58.0
HanXRQChr12g0360351 Helianthus annuus HOM05D005330 ORTHO05D006489 2.9e-94 349.4 293 58.0
Psat0s741g0240 Pisum sativum HOM05D005330 ORTHO05D006489 4.9e-94 348.6 293 59.4
Nn6g34611 Nelumbo nucifera HOM05D005330 ORTHO05D006489 6.4e-94 348.2 297 57.9
Ca_23387_v3 Cicer arietinum L. HOM05D005330 ORTHO05D006489 8.3e-94 347.8 291 58.4
Lsat_1_v5_gn_5_136241 Lactuca sativa HOM05D005330 ORTHO05D006489 8.3e-94 347.8 293 58.4
Sc10g0007910 Simmondsia chinensis HOM05D005330 ORTHO05D006489 8.3e-94 347.8 289 58.8
Potri.001G168700 Populus trichocarpa HOM05D005330 ORTHO05D006489 9.2e-93 344.4 287 59.6
Nitab4.5_0000189g0150 Nicotiana tabacum HOM05D005330 ORTHO05D006489 7.8e-92 341.3 295 58.0
Nitab4.5_0001199g0030 Nicotiana tabacum HOM05D005330 ORTHO05D006489 3.3e-90 335.9 295 56.9
Oeu015485.2 Olea europaea HOM05D005330 ORTHO05D006489 3.3e-90 335.9 312 56.7
EL10Ac7g16412 Beta vulgaris HOM05D005330 ORTHO05D006489 1.2e-89 334.0 292 56.2
AUR62009886 Chenopodium quinoa HOM05D005330 ORTHO05D006489 3.6e-89 332.4 289 54.7
Atru.chr1.3993 Acer truncatum HOM05D005330 ORTHO05D006489 2.3e-88 329.7 293 58.4
THA.LOC104810366 Tarenaya hassleriana HOM05D005330 ORTHO05D006489 2.3e-88 329.7 296 57.4
Glyma.03G080300 Glycine max HOM05D005330 ORTHO05D006489 5.2e-88 328.6 255 64.3
Sopen12g023810 Solanum pennellii HOM05D005330 ORTHO05D006489 1.5e-87 327.0 292 55.1
Solyc12g049330.2 Solanum lycopersicum HOM05D005330 ORTHO05D006489 2.6e-87 326.2 292 55.1
Ah.08g216810 Amaranthus hybridus HOM05D005330 ORTHO05D006489 9.9e-87 324.3 294 57.1
PGSC0003DMG400014100 Solanum tuberosum HOM05D005330 ORTHO05D006489 1.7e-86 323.6 278 57.2
Hund18689 Selenicereus undatus HOM05D005330 ORTHO05D006489 1.1e-85 320.9 286 54.9
Duzib160G0528 Durio zibethinus HOM05D005330 ORTHO05D006489 3.9e-83 312.4 253 61.7
MD09G1182600 Malus domestica HOM05D005330 ORTHO05D006489 1.1e-82 310.8 285 56.8
Peaxi162Scf00177g00417 Petunia axillaris HOM05D005330 ORTHO05D006489 1.5e-82 310.5 301 54.5
Aa31LG10G1260 Aethionema arabicum HOM05D005330 ORTHO05D006489 4.3e-82 308.9 303 54.1
Ciclev10025803m.g Citrus clementina HOM05D005330 ORTHO05D006489 9.6e-82 307.8 293 54.9
ATR0598G333 Amborella trichopoda HOM05D005330 ORTHO05D006489 2.4e-80 303.1 295 52.9
PSO135G0621 Papaver somniferum HOM05D005330 ORTHO05D006489 5.2e-80 302.0 300 54.0
SalBow6G0331 Salvia bowleyana HOM05D005330 ORTHO05D006489 3.4e-79 299.3 304 51.3
SalBow6G0719 Salvia bowleyana HOM05D005330 ORTHO05D006489 3.4e-79 299.3 304 51.3
Hma1.2p1_0291F.1_g115070 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 4.4e-79 298.9 288 55.6
PSO724G1321 Papaver somniferum HOM05D005330 ORTHO05D006489 9.9e-79 297.7 309 52.8
MD09G1182800 Malus domestica HOM05D005330 ORTHO05D006489 2.2e-78 296.6 293 53.9
Lj5A36G79 Lonicera japonica HOM05D005330 ORTHO05D006489 4.9e-78 295.4 309 53.7
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 4.9e-78 295.4 210 63.3
CARHR044500 Cardamine hirsuta HOM05D005330 ORTHO05D006489 2.1e-76 290.0 296 51.4
Rhsim08G0239400 Rhododendron simsii HOM05D005330 ORTHO05D006489 2.1e-76 290.0 292 53.1
BraA08t32169Z Brassica rapa HOM05D005330 ORTHO05D006489 1.7e-75 287.0 290 50.0
BcaC01g01438 Brassica carinata HOM05D005330 ORTHO05D006489 3.9e-75 285.8 293 49.5
C03p92030 Brassica napus HOM05D005330 ORTHO05D006489 6.6e-75 285.0 291 49.8
Sp1g40600 Schrenkiella parvula HOM05D005330 ORTHO05D006489 6.6e-75 285.0 314 48.1
BolC3t21521H Brassica oleracea HOM05D005330 ORTHO05D006489 8.7e-75 284.6 293 49.1
SGA_v2.0_scaffold122G33335 Striga asiatica HOM05D005330 ORTHO05D006489 1.9e-74 283.5 304 48.4
ECA234G4612 Erigeron canadensis HOM05D005330 ORTHO05D006489 3.3e-74 282.7 302 48.3
BcaB04g17020 Brassica carinata HOM05D005330 ORTHO05D006489 9.6e-74 281.2 291 49.8
A08p01180 Brassica napus HOM05D005330 ORTHO05D006489 2.1e-73 280.0 291 48.8
FAN05G5341 Fragaria x ananassa HOM05D005330 ORTHO05D006489 8.1e-73 278.1 307 47.2
MD09G1182700 Malus domestica HOM05D005330 ORTHO05D006489 1.1e-72 277.7 295 51.2
Aqoxy2G00145 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 1.8e-72 276.9 312 45.8
FvH4_6g34790 Fragaria vesca HOM05D005330 ORTHO05D006489 1.8e-72 276.9 307 47.2
RcHm_v2.0_Chr2g0145651 Rosa chinensis HOM05D005330 ORTHO05D006489 1.8e-72 276.9 295 49.5
BcaC08g43595 Brassica carinata HOM05D005330 ORTHO05D006489 3.1e-72 276.2 293 50.2
C06p09930 Brassica napus HOM05D005330 ORTHO05D006489 3.1e-72 276.2 293 50.2
BolC6t36066H Brassica oleracea HOM05D005330 ORTHO05D006489 3.1e-72 276.2 293 50.2
DCAR_016124 Daucus carota HOM05D005330 ORTHO05D006489 1.2e-71 274.2 286 51.0
Migut.I01076 Erythranthe guttata HOM05D005330 ORTHO05D006489 1.5e-71 273.9 307 48.9
A06p00510 Brassica napus HOM05D005330 ORTHO05D006489 2.0e-71 273.5 294 49.7
BraA06t23266Z Brassica rapa HOM05D005330 ORTHO05D006489 2.0e-71 273.5 294 49.7
Thhalv10011564m.g Eutrema salsugineum HOM05D005330 ORTHO05D006489 3.4e-71 272.7 297 48.8
HPP92_013292 Vanilla planifolia HOM05D005330 ORTHO05D006489 2.9e-70 269.6 292 46.9
AUR62001479 Chenopodium quinoa HOM05D005330 ORTHO05D006489 1.1e-69 267.7 289 47.8
BcaB07g33256 Brassica carinata HOM05D005330 ORTHO05D006489 3.2e-69 266.2 297 48.1
AL1G62870 Arabidopsis lyrata HOM05D005330 ORTHO05D006489 1.3e-67 260.8 292 51.0
SEGI_21309 Sequoiadendron giganteum HOM05D005330 ORTHO05D006489 1.5e-66 257.3 300 47.0
AT1G54150 Arabidopsis thaliana HOM05D005330 ORTHO05D006489 3.3e-66 256.1 296 49.7
MD02G1089500 Malus domestica HOM05D005330 ORTHO05D006489 4.3e-66 255.8 304 48.7
HanXRQChr12g0360331 Helianthus annuus HOM05D005330 ORTHO05D006489 2.4e-64 250.0 293 48.5
Carub.0001s4339 Capsella rubella HOM05D005330 ORTHO05D006489 4.0e-64 249.2 296 48.3
SGA_v2.0_scaffold71G23853 Striga asiatica HOM05D005330 ORTHO05D006489 4.0e-64 249.2 341 39.9
COL.COLO4_30752 Corchorus olitorius HOM05D005330 ORTHO05D006489 3.0e-59 233.0 290 47.9
PSO135G0922 Papaver somniferum HOM05D005330 ORTHO05D006489 3.3e-58 229.6 274 47.1
CAN.G1455.4 Capsicum annuum HOM05D005330 ORTHO05D006489 8.2e-57 224.9 169 62.1
Os03g0177300 Oryza sativa ssp. japonica HOM05D005330 ORTHO05D006489 5.8e-55 218.8 289 40.5
PSO135G0120 Papaver somniferum HOM05D005330 ORTHO05D006489 4.9e-54 215.7 272 45.2
SMO118G0169 Selaginella moellendorffii HOM05D005330 ORTHO05D006489 8.4e-54 214.9 293 41.6
CDE05G1829 Ceratophyllum demersum HOM05D005330 ORTHO05D006489 2.5e-53 213.4 215 50.2
Mapoly0002s0144 Marchantia polymorpha HOM05D005330 ORTHO05D006489 4.2e-53 212.6 331 37.8
TAR624G1001 Trochodendron aralioides HOM05D005330 ORTHO05D006489 1.0e-51 208.0 135 71.1
AagrBONN_evm.TU.Sc2ySwM_228.1646 Anthoceros agrestis HOM05D005330 ORTHO05D006489 1.1e-48 198.0 323 38.7
TAR624G0147 Trochodendron aralioides HOM05D005330 ORTHO05D006489 1.3e-43 181.0 135 65.9
Actinidia21791 Actinidia chinensis HOM05D005330 ORTHO05D006489 8.7e-43 178.3 201 46.8
CAN.G1080.1 Capsicum annuum HOM05D005330 ORTHO05D006489 7.4e-42 175.3 132 62.1
Pp3c13_6970 Physcomitrium patens HOM05D005330 ORTHO05D006489 2.2e-41 173.7 396 30.1
CSS0046024 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 9.4e-37 158.3 108 65.7
Dinv20433 Davidia involucrata HOM05D005330 ORTHO05D006489 7.4e-34 148.7 228 40.8
Lsat_1_v5_gn_5_136301 Lactuca sativa HOM05D005330 ORTHO05D006489 1.3e-33 147.9 252 37.7
Pp3c16_12380 Physcomitrium patens HOM05D005330 ORTHO05D006489 6.9e-32 142.1 332 30.7
PSO724G1224 Papaver somniferum HOM05D005330 ORTHO05D006489 9.1e-32 141.7 109 60.6
Aqoxy3G00203 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 1.5e-31 141.0 279 34.4
Zm00001eb401910 Zea mays HOM05D005330 ORTHO05D006489 4.7e-28 129.4 136 46.3
CBR_g17139 Chara braunii HOM05D005330 ORTHO05D006489 1.8e-27 127.5 220 34.5
Aqoxy3G00178 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 3.7e-25 119.8 154 42.9
CSS0036813 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 5.9e-23 112.5 127 50.4
Oeu020346.1 Olea europaea HOM05D005330 ORTHO05D006489 1.0e-11 75.1 133 37.6
RhsimUnG0257000 Rhododendron simsii HOM05D002922 ORTHO05D000401 4.5e-07 59.7 41 68.3
Actinidia21790 Actinidia chinensis HOM05D005330 ORTHO05D006489 1.3e-06 58.2 41 58.5


User provided reference genes

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