Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 2.9e-235 818.1 407 100.0
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 5.0e-219 764.2 407 94.1
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 7.2e-218 760.4 388 97.9
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 3.1e-205 718.4 408 88.2
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 2.6e-199 698.7 407 88.2
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 5.7e-191 671.0 407 82.3
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 9.8e-191 670.2 399 83.7
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 9.8e-191 670.2 406 83.7
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.7e-190 669.5 406 83.7
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 4.9e-190 667.9 401 83.5
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.4e-189 666.4 407 82.8
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 4.1e-189 664.8 405 83.5
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 7.8e-188 660.6 405 82.0
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 2.9e-187 658.7 435 78.2
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 6.6e-187 657.5 434 78.1
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 2.5e-186 655.6 416 79.8
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 3.3e-186 655.2 401 82.8
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 1.6e-185 652.9 403 80.9
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 1.6e-185 652.9 413 80.6
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 3.6e-185 651.7 393 83.0
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 4.7e-185 651.4 416 79.1
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 8.0e-185 650.6 403 81.4
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.8e-184 649.4 407 80.3
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 3.0e-184 648.7 423 78.3
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 6.8e-184 647.5 390 82.6
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 6.8e-184 647.5 395 82.3
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 8.9e-184 647.1 415 77.8
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.5e-183 646.4 398 81.7
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 7.5e-183 644.0 395 81.0
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 9.8e-183 643.7 396 81.6
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 1.3e-182 643.3 443 74.7
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 2.2e-182 642.5 417 79.1
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 3.7e-182 641.7 391 81.3
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 4.9e-182 641.3 412 80.3
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 6.4e-182 641.0 391 82.4
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.9e-181 639.4 402 78.9
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.4e-181 639.0 383 81.7
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 1.6e-180 636.3 396 80.1
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.6e-180 636.3 396 80.6
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 2.0e-180 636.0 383 81.7
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 2.0e-180 636.0 399 78.9
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 2.7e-180 635.6 401 77.8
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 3.5e-180 635.2 429 76.5
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 4.6e-180 634.8 369 83.2
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 6.0e-180 634.4 394 79.4
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 6.0e-180 634.4 390 79.7
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 6.0e-180 634.4 394 79.4
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 6.0e-180 634.4 424 75.0
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 7.8e-180 634.0 391 81.1
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 7.8e-180 634.0 394 81.0
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.3e-179 633.3 413 77.5
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.3e-179 633.3 368 83.4
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 1.7e-179 632.9 390 79.5
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.7e-179 632.9 357 85.7
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 3.0e-179 632.1 404 79.5
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 5.0e-179 631.3 414 78.0
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 8.6e-179 630.6 405 77.5
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 1.9e-178 629.4 394 79.4
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 5.6e-178 627.9 415 77.6
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 5.6e-178 627.9 400 80.0
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 2.1e-177 625.9 398 78.4
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.1e-177 625.9 413 76.8
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 1.4e-176 623.2 409 79.0
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 8.9e-176 620.5 412 77.7
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.2e-175 620.2 414 75.4
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 2.2e-174 615.9 371 82.2
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 4.9e-174 614.8 389 79.4
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 1.9e-173 612.8 398 78.1
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 4.1e-173 611.7 421 74.3
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 4.1e-173 611.7 371 80.9
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 7.0e-173 610.9 376 80.1
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 2.3e-171 605.9 399 77.7
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 3.9e-171 605.1 361 80.9
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.0e-171 604.7 404 77.0
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 5.0e-171 604.7 403 76.4
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 8.6e-171 604.0 392 77.3
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 8.6e-171 604.0 466 67.2
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 4.3e-170 601.7 404 76.2
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 9.5e-170 600.5 403 76.7
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 4.7e-169 598.2 376 79.3
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 4.7e-169 598.2 409 76.3
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 1.4e-168 596.7 391 75.4
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 2.6e-167 592.4 389 75.8
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.8e-167 591.3 430 72.3
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 9.9e-167 590.5 412 72.6
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 9.9e-167 590.5 333 85.3
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-166 590.1 355 81.4
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.3e-166 590.1 401 75.1
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 1.3e-166 590.1 414 72.9
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.7e-166 589.7 402 75.1
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.4e-165 586.6 360 79.7
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 3.2e-165 585.5 400 72.8
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 6.6e-163 577.8 376 76.6
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.9e-162 576.2 401 74.6
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.3e-162 574.3 327 84.4
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.3e-162 574.3 327 84.4
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.2e-161 573.5 354 76.3
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 2.4e-160 569.3 435 67.8
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 7.6e-159 564.3 341 81.2
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 3.0e-155 552.4 382 74.3
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 4.7e-153 545.0 465 61.3
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.4e-152 543.5 550 56.0
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 9.3e-149 530.8 382 67.5
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.6e-148 530.0 576 53.5
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 5.1e-147 525.0 372 70.2
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.1e-146 523.9 413 67.8
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 4.3e-146 521.9 371 70.4
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 1.3e-137 493.8 523 54.1
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.0e-123 446.0 432 59.0
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 3.3e-122 442.6 334 66.8
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 5.0e-118 428.7 379 58.0
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 7.7e-111 404.8 209 90.9
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.2e-108 397.5 203 92.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 4.7e-108 395.6 386 51.3
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.4e-107 394.0 392 52.3
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 9.1e-80 301.6 298 51.3
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.8e-60 236.9 324 38.9
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 8.9e-59 231.9 114 94.7
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.0e-58 230.7 122 88.5
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.3e-49 201.4 181 60.8
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 7.6e-42 175.6 111 76.6
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 1.1e-40 171.8 211 49.3
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 2.9e-33 147.1 103 68.9
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 6.0e-31 139.4 69 88.4
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-28 131.7 73 90.4
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 8.1e-28 129.0 85 74.1
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.2e-26 125.2 84 72.6
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.3e-22 111.7 80 68.8
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.8e-19 101.3 53 84.9
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.1e-15 87.8 43 88.4
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 8.7e-14 82.4 62 69.4
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.8e-12 76.6 43 83.7
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 3.4e-10 70.5 70 57.1
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 5.0e-09 66.6 38 73.7
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 3.2e-08 63.9 67 50.7
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 3.2e-08 63.9 39 74.4


User provided reference genes

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