Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 2646.3 1326 100.0
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 2542.7 1327 96.1
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 2415.6 1328 91.7
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 2260.0 1332 86.3
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1677.5 1339 65.0
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1672.5 1338 65.0
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1637.1 1335 63.8
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1623.6 1333 62.6
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1607.8 1341 62.5
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1604.3 1340 62.9
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1599.7 1338 62.0
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1588.2 1328 62.9
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1585.5 1323 62.2
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1583.9 1337 61.6
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1575.5 1343 61.1
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1573.5 1337 61.5
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1572.0 1341 61.1
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1571.6 1343 60.9
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1569.3 1341 60.6
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1567.0 1338 60.9
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1565.8 1332 61.2
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1563.9 1333 61.2
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1562.0 1322 62.0
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1557.3 1339 61.3
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1552.3 1358 60.0
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1543.9 1338 60.6
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1541.2 1343 59.9
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1531.2 1331 60.2
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1531.2 1405 57.5
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1530.4 1343 59.5
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1528.1 1335 60.3
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1525.8 1334 61.3
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1524.6 1337 59.8
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1524.2 1338 59.4
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1523.8 1338 59.4
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1522.7 1336 59.9
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1521.1 1273 62.1
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1520.4 1338 60.0
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1520.0 1342 58.2
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1515.0 1337 59.6
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1511.5 1376 58.4
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1506.5 1333 59.1
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1506.5 1329 58.5
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1504.6 1465 55.6
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1494.6 1259 61.8
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1484.2 1344 58.8
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1481.1 1325 59.8
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1476.8 1208 63.0
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1476.1 1322 58.9
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1474.9 1208 62.9
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1473.8 1321 58.1
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1468.8 1336 58.2
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1468.0 1331 57.9
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1458.4 1323 57.4
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1451.4 1348 57.3
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1451.0 1321 57.2
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1449.9 1340 57.9
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1449.1 1341 57.3
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1447.6 1322 58.0
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1446.4 1345 57.2
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1440.2 1332 57.1
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1436.8 1320 57.7
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1436.8 1319 57.5
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1435.2 1346 56.5
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1433.7 1345 56.9
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1426.0 1332 57.0
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1424.8 1332 56.9
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1422.1 1337 56.3
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1413.7 1342 56.5
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1406.3 1314 57.1
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1404.0 1320 57.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1401.3 1335 56.3
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1400.2 1343 56.4
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1389.4 1339 55.7
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1373.6 1343 56.4
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1372.8 1327 55.7
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1355.9 1331 55.7
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1351.7 1320 55.4
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1340.9 1318 55.5
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1340.9 1318 55.6
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1339.3 1317 55.4
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1335.1 1319 55.3
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1335.1 1319 55.3
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1323.1 1320 54.6
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1314.7 1321 53.5
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1306.2 1252 55.4
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1266.1 1329 51.3
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1220.3 1067 60.2
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1195.3 1340 50.2
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1192.2 1323 50.3
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1175.2 1319 49.3
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1163.3 1320 48.6
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1151.3 977 62.2
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1143.6 1341 47.0
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1111.3 904 62.5
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1106.3 990 59.7
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1076.2 1228 49.8
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 1.3e-284 983.8 847 60.3
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.4e-275 953.7 1313 46.0
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 2.2e-260 903.3 1326 40.3
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 4.8e-247 859.0 1278 40.3
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 2.3e-225 786.9 1327 37.6
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 2.3e-225 786.9 1318 38.6
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 8.9e-225 785.0 1134 40.7
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.4e-214 751.1 953 45.4
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 5.0e-159 566.6 585 54.2
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 9.7e-155 552.4 489 59.5
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.2e-144 518.8 594 47.3
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 3.2e-113 414.5 1155 28.7
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 7.5e-99 366.7 291 61.2
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 3.3e-94 351.3 326 58.3
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.1e-89 336.3 326 55.5
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.4e-89 335.9 1069 28.3
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.5e-86 325.1 357 52.7
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 4.8e-77 294.3 261 62.8
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 2.5e-57 228.8 317 43.5
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.5e-57 227.6 208 59.1
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.2e-56 226.5 220 52.3
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.4e-49 203.0 188 58.5
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 7.2e-49 200.7 308 42.2
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.3e-42 179.9 152 62.5
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 3.3e-38 165.2 119 69.7
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 7.7e-27 127.5 674 25.2
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 2.2e-26 125.9 134 53.7
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 2.1e-24 119.4 122 51.6
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.3e-18 100.1 102 48.0
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 1.1e-12 80.5 67 65.7
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.7e-10 73.2 68 64.7
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 6.5e-10 71.2 148 32.4
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 8.6e-10 70.9 105 42.9


User provided reference genes

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