Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 1.7e-307 1058.5 531 100.0
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 5.6e-295 1016.9 551 93.6
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 8.6e-288 993.0 531 93.4
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.2e-270 936.0 532 87.8
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 2.7e-265 918.3 532 86.8
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 1.1e-215 753.4 533 71.5
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 1.3e-214 750.0 531 73.1
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 1.7e-214 749.6 516 73.4
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 8.2e-214 747.3 535 70.8
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 5.3e-213 744.6 533 72.4
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 1.2e-212 743.4 558 69.2
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 3.8e-211 738.4 552 68.7
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 8.5e-211 737.3 534 69.9
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.2e-209 733.4 565 68.1
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 1.2e-209 733.4 547 69.8
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 1.8e-208 729.6 534 70.4
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 1.8e-208 729.6 557 67.9
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 8.8e-208 727.2 589 65.2
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 8.8e-208 727.2 565 67.6
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 2.0e-207 726.1 532 69.7
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 5.7e-207 724.5 533 70.5
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 6.3e-206 721.1 535 70.5
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 4.1e-205 718.4 541 70.8
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 7.0e-205 717.6 537 70.4
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 7.0e-205 717.6 535 69.0
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 9.1e-205 717.2 537 69.6
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 2.7e-204 715.7 544 69.1
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 2.2e-203 712.6 536 69.4
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 2.9e-203 712.2 536 69.4
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 1.1e-202 710.3 536 68.8
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 1.5e-202 709.9 539 69.6
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 5.5e-202 708.0 525 69.3
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.7e-201 705.7 542 69.2
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 1.2e-199 700.3 534 68.2
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 2.0e-199 699.5 541 67.8
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 3.4e-199 698.7 549 67.4
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.2e-196 690.3 468 73.7
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 3.5e-196 688.7 488 70.1
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 5.0e-195 684.9 535 65.6
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.1e-194 683.7 483 72.5
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 4.2e-194 681.8 501 69.7
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 7.2e-194 681.0 535 65.2
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 9.4e-194 680.6 499 69.9
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 1.0e-192 677.2 500 70.0
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 2.3e-192 676.0 533 66.6
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 6.8e-192 674.5 506 69.4
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 2.0e-191 672.9 443 77.7
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 3.4e-191 672.2 520 66.3
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 9.8e-191 670.6 540 65.4
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 4.9e-190 668.3 535 65.0
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 7.7e-188 661.0 534 64.2
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 1.7e-187 659.8 471 70.3
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 6.6e-187 657.9 549 63.6
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.5e-186 656.8 591 61.1
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 1.9e-186 656.4 451 76.1
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 7.3e-186 654.4 504 67.9
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 1.6e-185 653.3 529 65.4
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 4.7e-185 651.7 508 67.9
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 4.0e-184 648.7 538 64.3
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 3.7e-182 642.1 505 65.9
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 2.4e-181 639.4 536 63.1
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 7.0e-181 637.9 547 62.7
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 9.2e-181 637.5 464 69.6
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 9.2e-181 637.5 505 66.3
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 5.9e-180 634.8 477 69.2
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.3e-179 633.6 547 62.9
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 2.3e-179 632.9 520 64.0
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 3.0e-179 632.5 544 62.3
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 5.0e-179 631.7 542 62.2
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 6.6e-179 631.3 542 62.2
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 6.6e-179 631.3 544 62.1
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.5e-178 630.2 478 68.0
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 2.5e-178 629.4 518 63.9
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 2.5e-178 629.4 533 64.0
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 2.8e-177 625.9 477 67.1
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 6.2e-177 624.8 548 60.8
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 2.0e-175 619.8 481 66.7
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 4.4e-175 618.6 513 64.3
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 9.8e-175 617.5 551 61.3
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.2e-174 616.3 513 63.9
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 5.4e-173 611.7 497 65.6
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 2.7e-172 609.4 506 62.8
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 2.7e-172 609.4 548 59.7
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 1.0e-171 607.4 534 60.7
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 3.3e-170 602.4 455 68.1
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 1.2e-167 594.0 523 60.6
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 1.3e-166 590.5 509 61.1
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 8.3e-166 587.8 468 64.7
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 1.4e-165 587.0 462 66.7
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 2.1e-164 583.2 430 70.5
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 3.3e-162 575.9 512 58.8
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 7.1e-157 558.1 430 67.4
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 1.7e-147 526.9 460 59.8
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 5.3e-144 515.4 499 56.9
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 5.8e-143 511.9 501 56.1
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 3.2e-109 399.8 291 69.4
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.7e-102 377.5 327 57.2
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 8.0e-92 342.0 265 65.7
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.0e-90 337.4 266 66.2
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 9.7e-90 335.1 266 65.8
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 6.5e-86 322.4 480 41.2
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 2.8e-81 307.0 311 54.7
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 1.3e-78 298.1 430 39.5
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 1.8e-75 287.7 167 80.8
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 2.0e-74 284.3 198 72.2
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 6.8e-67 259.2 406 37.7
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 1.3e-65 255.0 380 39.5
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 9.2e-56 222.2 147 72.8
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 1.9e-53 214.5 125 75.2
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 1.1e-51 208.8 125 76.0
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 5.2e-51 206.5 261 47.1
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 1.4e-48 198.4 144 64.6
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 4.1e-48 196.8 167 61.7
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 6.4e-41 172.9 336 34.8
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 2.2e-33 147.9 80 85.0
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 2.7e-31 141.0 109 71.6
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 3.0e-30 137.5 221 41.6
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 1.7e-25 121.7 92 69.6
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 7.4e-21 106.3 83 65.1
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 9.6e-21 105.9 71 69.0
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 6.9e-19 99.8 114 51.8
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 2.9e-17 94.4 53 81.1
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.1e-16 92.4 77 66.2
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 5.5e-16 90.1 102 54.9
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 1.3e-14 85.5 138 44.2
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 3.3e-13 80.9 93 47.3
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 4.3e-13 80.5 72 62.5
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 3.1e-11 74.3 46 67.4
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 5.3e-11 73.6 127 44.1
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 1.3e-06 58.9 32 81.2


User provided reference genes

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