Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 1.9e-133 479.2 245 100.0
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 6.6e-126 454.1 245 92.7
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 7.6e-122 440.7 245 92.7
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 2.9e-113 412.1 243 87.7
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 9.7e-93 344.0 248 66.1
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 2.2e-92 342.8 235 68.1
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.4e-91 340.1 235 66.4
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 9.1e-91 337.4 231 66.7
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 1.2e-90 337.0 222 68.0
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.5e-90 335.1 222 69.4
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 7.7e-90 334.3 217 70.0
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.0e-89 334.0 247 65.6
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 1.3e-89 333.6 233 65.7
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 1.7e-89 333.2 219 69.4
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 2.2e-89 332.8 218 68.3
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 2.2e-89 332.8 245 63.7
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 2.9e-89 332.4 222 68.5
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 6.5e-89 331.3 245 64.9
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 1.4e-88 330.1 249 63.9
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 1.9e-88 329.7 217 67.7
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 2.5e-88 329.3 218 68.8
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 7.2e-88 327.8 243 67.5
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 7.2e-88 327.8 241 63.5
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 9.4e-88 327.4 219 68.0
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 2.7e-87 325.9 226 65.5
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 2.7e-87 325.9 218 66.5
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 6.1e-87 324.7 232 63.8
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 1.0e-86 323.9 217 66.8
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 2.3e-86 322.8 237 62.9
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 2.6e-85 319.3 226 65.0
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 3.3e-85 318.9 243 60.9
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 3.3e-85 318.9 247 62.3
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 3.3e-85 318.9 244 61.1
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 5.7e-85 318.2 237 61.6
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 7.4e-85 317.8 230 72.2
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 3.7e-84 315.5 230 71.7
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 6.3e-84 314.7 225 64.4
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 8.2e-84 314.3 218 72.9
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 8.2e-84 314.3 222 65.3
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 1.1e-83 313.9 226 64.2
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 1.8e-83 313.2 243 60.5
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.8e-83 313.2 225 72.0
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 3.1e-83 312.4 215 67.0
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 4.1e-83 312.0 220 65.5
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 4.1e-83 312.0 229 63.3
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 5.3e-83 311.6 234 62.4
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 6.9e-83 311.2 242 62.8
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 1.5e-82 310.1 244 60.2
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 2.6e-82 309.3 225 64.0
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 2.6e-82 309.3 225 64.0
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 2.6e-82 309.3 225 64.0
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 4.5e-82 308.5 219 63.5
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 5.9e-82 308.1 240 60.8
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 1.0e-81 307.4 221 69.2
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 1.3e-81 307.0 222 63.5
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 1.3e-81 307.0 215 61.9
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.7e-81 306.6 263 57.8
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.7e-81 306.6 263 57.8
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 2.9e-81 305.8 240 60.4
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 3.8e-81 305.4 224 63.4
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 8.5e-81 304.3 237 58.6
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 1.9e-80 303.1 215 64.7
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 2.5e-80 302.8 213 64.3
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 2.1e-79 299.7 223 61.9
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 2.7e-79 299.3 208 63.9
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 1.0e-78 297.4 215 63.7
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.4e-78 297.0 202 66.8
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 2.3e-78 296.2 204 65.2
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 2.3e-78 296.2 229 59.4
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 3.0e-78 295.8 234 56.8
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 3.9e-78 295.4 206 63.1
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 8.8e-78 294.3 255 55.7
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 8.8e-78 294.3 208 64.4
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 2.0e-77 293.1 222 59.0
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 3.3e-77 292.4 220 62.3
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 9.7e-77 290.8 220 59.1
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.8e-76 289.3 218 61.0
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 4.1e-75 285.4 223 60.1
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 2.0e-74 283.1 208 62.0
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 2.0e-74 283.1 243 54.3
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 4.5e-74 282.0 235 57.0
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 6.5e-73 278.1 213 57.7
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 1.5e-72 276.9 243 54.3
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.7e-68 263.5 202 61.4
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 2.4e-67 259.6 182 64.3
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.0e-65 254.2 178 65.2
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 2.9e-65 252.7 175 64.6
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 3.8e-65 252.3 167 70.7
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 3.2e-64 249.2 170 64.7
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 4.2e-64 248.8 167 67.1
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 5.2e-62 241.9 247 52.6
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 8.8e-62 241.1 170 66.5
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 1.2e-61 240.7 168 67.3
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 6.3e-60 235.0 170 58.8
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 1.8e-59 233.4 152 65.8
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 9.5e-56 221.1 165 63.0
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.6e-53 213.0 169 59.8
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 7.3e-48 194.9 292 36.3
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 2.9e-44 183.0 162 55.6
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 2.9e-44 183.0 226 42.9
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 3.7e-44 182.6 242 39.7
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 4.4e-37 159.1 187 48.7
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 4.1e-35 152.5 114 62.3
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 2.7e-34 149.8 115 56.5
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 1.7e-33 147.1 145 46.9
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 1.3e-28 131.0 113 53.1
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 1.2e-26 124.4 109 57.8
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 6.9e-14 82.0 164 32.3
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 9.0e-14 81.6 46 80.4
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 9.0e-14 81.6 61 54.1
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 4.4e-13 79.3 58 53.4
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 5.8e-13 79.0 121 37.2
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 5.8e-13 79.0 44 79.5
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 7.6e-13 78.6 52 59.6
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 3.8e-12 76.3 95 43.2
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 6.4e-12 75.5 133 34.6
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 1.5e-08 64.3 52 51.9
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 4.3e-08 62.8 177 27.1


User provided reference genes

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