Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.5e-306 1055.4 564 100.0
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 6.8e-275 950.3 570 89.8
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 1.9e-256 889.0 616 79.5
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 1.1e-245 853.2 570 80.9
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 4.0e-182 642.1 576 64.9
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.5e-176 623.6 583 63.6
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 2.5e-176 622.9 569 61.7
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 4.2e-168 595.5 676 57.1
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 6.8e-166 588.2 537 64.1
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 2.0e-165 586.6 579 57.3
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 2.2e-164 583.2 571 59.7
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 1.2e-162 577.4 575 57.7
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 9.5e-160 567.8 600 58.0
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 2.1e-159 566.6 616 53.6
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 1.5e-157 560.5 585 56.1
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 2.0e-157 560.1 640 55.6
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 3.4e-157 559.3 581 54.9
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 4.9e-156 555.4 568 58.8
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 9.2e-155 551.2 598 55.9
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 1.6e-154 550.4 572 60.5
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 7.8e-154 548.1 649 52.7
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 2.3e-153 546.6 579 54.9
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 3.0e-153 546.2 579 54.4
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 1.5e-152 543.9 577 58.8
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 7.3e-152 541.6 574 55.1
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 8.0e-151 538.1 572 58.7
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 7.5e-149 531.6 587 54.5
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.9e-148 529.6 580 54.0
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 6.4e-148 528.5 576 58.0
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 1.1e-147 527.7 618 55.5
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 3.2e-147 526.2 403 69.5
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 2.1e-146 523.5 582 57.4
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 3.5e-146 522.7 657 53.4
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 6.6e-145 518.5 596 57.0
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 1.5e-144 517.3 580 57.4
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 7.3e-144 515.0 534 58.2
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.2e-141 507.7 623 53.8
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 1.2e-141 507.7 619 52.3
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 2.6e-141 506.5 592 53.5
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 2.6e-141 506.5 690 49.0
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.2e-140 503.4 551 54.8
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 6.4e-140 501.9 638 50.5
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 8.3e-140 501.5 598 54.2
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 2.4e-139 500.0 631 51.5
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 4.1e-139 499.2 503 54.7
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 7.1e-139 498.4 530 58.3
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 7.1e-139 498.4 672 50.3
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 1.6e-138 497.3 596 54.0
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 4.6e-138 495.7 650 50.6
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 1.0e-137 494.6 621 47.3
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 2.3e-137 493.4 571 55.3
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 1.5e-136 490.7 530 55.8
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 2.5e-136 490.0 411 69.1
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 8.1e-135 485.0 528 56.4
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 8.9e-134 481.5 565 50.3
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 2.6e-133 479.9 595 50.9
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.6e-133 479.9 649 48.8
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 4.4e-133 479.2 306 74.2
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 4.4e-133 479.2 311 74.3
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 1.9e-131 473.8 627 48.3
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 2.3e-129 466.8 306 72.5
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 3.0e-129 466.5 388 67.8
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 5.1e-129 465.7 590 50.8
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.2e-127 461.1 567 51.9
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.2e-127 461.1 567 51.9
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.6e-127 460.7 564 52.1
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.6e-127 460.7 598 51.3
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 8.1e-127 458.4 567 51.5
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.4e-126 457.6 566 51.9
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 1.8e-126 457.2 367 62.7
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 1.2e-125 454.5 303 72.9
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 1.2e-125 454.5 422 60.7
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 3.4e-125 453.0 592 49.5
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 2.9e-124 449.9 563 50.1
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 3.8e-124 449.5 628 47.8
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 7.1e-123 445.3 578 51.0
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 9.3e-123 444.9 573 47.6
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 9.3e-123 444.9 589 48.9
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 3.5e-122 443.0 565 51.0
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 7.8e-122 441.8 575 52.3
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 7.8e-122 441.8 578 50.3
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 1.3e-121 441.0 702 42.2
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 3.1e-118 429.9 650 44.0
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 2.0e-117 427.2 606 45.9
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 9.9e-117 424.9 516 50.8
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.4e-115 421.0 276 72.8
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 1.3e-113 414.5 369 60.7
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.0e-113 413.3 440 52.0
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.1e-112 411.4 552 49.6
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.9e-107 394.0 559 48.8
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 5.6e-104 382.5 658 39.5
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.1e-102 378.3 560 45.9
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.1e-102 378.3 485 49.9
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 5.3e-102 375.9 397 58.2
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.2e-101 374.8 454 49.3
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.0e-101 374.0 381 57.0
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.4e-99 367.9 565 45.8
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 5.5e-99 365.9 458 46.9
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.6e-98 364.4 380 51.1
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.6e-98 364.4 380 51.1
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 3.9e-97 359.8 305 59.3
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.5e-96 357.8 458 48.7
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.9e-96 357.5 347 51.6
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.5e-96 357.1 641 40.1
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.4e-94 351.3 459 48.6
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 2.2e-92 344.0 567 45.1
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.2e-92 344.0 544 44.5
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 1.4e-91 341.3 400 48.0
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 2.4e-86 323.9 299 58.5
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 4.1e-86 323.2 448 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 7.4e-80 302.4 332 47.6
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.4e-75 288.1 331 43.5
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 4.7e-74 283.1 330 43.0
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 2.3e-73 280.8 441 43.1
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.3e-71 275.0 583 36.4
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.0e-65 253.4 287 53.3
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.0e-61 241.1 278 56.1
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 7.5e-56 222.6 267 44.9
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 8.6e-52 209.1 125 80.8
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 3.7e-47 193.7 382 33.2
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.7e-39 168.3 317 40.4
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.4e-38 165.2 294 35.4
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.5e-32 145.2 108 65.7
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.9e-27 128.3 184 40.2
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 7.6e-24 116.3 68 79.4
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 9.9e-24 115.9 116 55.2
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.0e-17 94.0 63 69.8
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.4e-14 85.5 62 64.5
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 1.2e-13 82.4 111 48.6
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 1.0e-12 79.3 57 59.6
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 2.8e-10 71.2 45 80.0
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 8.1e-10 69.7 328 31.4
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.4e-09 68.2 53 60.4
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 4.2e-06 57.4 37 64.9


User provided reference genes

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