Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 3.2e-303 1044.3 522 100.0
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 6.3e-267 923.7 523 87.0
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 1.0e-261 906.4 562 85.1
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 5.4e-242 840.9 523 83.2
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 2.8e-222 775.4 533 72.6
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 2.7e-217 758.8 547 70.4
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 2.3e-216 755.7 541 70.6
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 3.9e-216 755.0 538 68.8
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 5.1e-216 754.6 550 70.2
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 8.6e-216 753.8 538 70.3
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 3.6e-214 748.4 526 71.7
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 4.7e-214 748.0 526 71.1
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 8.1e-214 747.3 543 69.4
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 1.1e-213 746.9 537 69.1
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 5.2e-213 744.6 537 69.6
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 1.5e-212 743.0 542 69.4
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.5e-212 743.0 540 70.0
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 2.6e-212 742.3 527 69.1
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 7.6e-212 740.7 562 67.1
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.9e-211 738.8 540 69.4
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 2.9e-211 738.8 533 68.9
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 4.9e-211 738.0 540 68.7
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 8.4e-211 737.3 543 68.3
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.4e-210 736.5 525 70.7
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 4.1e-210 734.9 540 68.3
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 4.1e-210 734.9 538 69.5
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 5.4e-210 734.6 545 68.1
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 2.7e-209 732.3 546 68.7
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 4.6e-209 731.5 546 68.1
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 7.8e-209 730.7 530 69.1
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 7.8e-209 730.7 537 67.6
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.3e-208 729.2 533 69.2
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 2.3e-208 729.2 550 68.2
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 1.1e-207 726.9 537 68.0
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.5e-207 726.5 548 65.5
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 1.9e-207 726.1 558 65.4
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 3.3e-207 725.3 537 68.2
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 3.3e-207 725.3 527 68.1
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 7.3e-207 724.2 550 66.5
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 7.3e-207 724.2 526 69.4
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 9.6e-207 723.8 527 68.3
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 1.6e-206 723.0 528 69.7
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 3.1e-205 718.8 527 67.6
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 4.0e-205 718.4 532 67.3
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 4.0e-205 718.4 534 67.8
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 4.0e-205 718.4 554 65.7
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 6.9e-205 717.6 539 67.7
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.2e-204 716.8 525 67.8
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.5e-204 716.5 536 67.4
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 2.6e-204 715.7 531 67.4
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 2.6e-204 715.7 531 67.4
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 2.6e-204 715.7 537 67.0
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 3.4e-204 715.3 525 68.6
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 5.8e-204 714.5 522 68.6
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 7.6e-204 714.1 537 66.5
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.2e-203 712.6 545 67.7
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 2.9e-203 712.2 542 65.5
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 2.9e-203 712.2 531 67.6
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 4.9e-203 711.4 543 66.7
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 1.1e-202 710.3 511 70.5
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 1.9e-202 709.5 536 66.4
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.6e-201 706.4 551 65.9
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 3.5e-201 705.3 564 65.1
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 4.6e-201 704.9 556 64.4
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.0e-200 703.7 546 66.7
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.6e-198 696.4 521 67.4
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.1e-198 696.0 546 66.5
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 2.1e-198 696.0 525 66.9
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.1e-197 693.7 552 63.9
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.4e-197 693.3 548 65.5
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.4e-197 693.3 552 64.5
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 2.4e-197 692.6 594 61.3
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 6.9e-197 691.0 641 59.0
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 1.4e-194 683.3 536 64.7
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 3.2e-194 682.2 589 61.8
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 9.3e-194 680.6 536 64.0
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 4.6e-193 678.3 543 63.7
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 1.0e-192 677.2 541 64.7
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 1.9e-191 672.9 522 65.9
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 4.5e-188 661.8 571 61.1
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 1.4e-186 656.8 535 63.2
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 1.6e-185 653.3 536 60.6
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 4.3e-183 645.2 513 63.5
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 4.3e-183 645.2 555 58.9
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 2.0e-180 636.3 488 64.5
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 8.4e-179 630.9 478 66.7
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 4.6e-177 625.2 500 66.4
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 6.7e-176 621.3 453 68.4
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.8e-174 615.9 560 58.9
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 9.0e-173 610.9 384 77.3
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.6e-172 609.4 478 66.3
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 7.2e-170 601.3 558 55.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.6e-169 600.1 552 59.8
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 8.8e-168 594.3 462 63.9
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.7e-163 580.1 527 58.4
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.1e-160 568.5 521 58.7
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.1e-157 559.3 538 56.9
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 3.1e-157 559.3 342 76.6
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 8.2e-150 534.6 415 65.8
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 3.2e-146 522.7 525 51.4
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 1.9e-138 496.9 276 83.7
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 8.8e-136 488.0 548 47.3
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 4.5e-132 475.7 275 80.4
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.4e-125 454.1 339 64.9
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 3.3e-122 443.0 533 49.3
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.4e-117 427.6 524 47.1
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 1.9e-117 427.2 372 61.8
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 7.0e-117 425.2 342 59.9
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 6.4e-110 402.1 320 57.2
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 5.1e-99 365.9 364 56.3
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 6.2e-97 359.0 217 75.1
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 9.9e-95 351.7 401 50.9
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.2e-93 346.3 270 64.4
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 9.2e-93 345.1 186 84.9
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 5.6e-90 335.9 186 84.4
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.0e-87 327.4 381 51.2
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 4.9e-86 322.8 531 34.5
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 7.6e-79 298.9 504 37.1
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 9.3e-77 292.0 487 35.9
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.2e-76 291.6 271 57.9
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.7e-73 280.0 208 63.5
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 4.2e-69 266.5 312 42.3
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 1.8e-67 261.2 259 56.0
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 5.1e-67 259.6 272 54.8
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 4.5e-63 246.5 314 40.8
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 5.8e-63 246.1 258 53.9
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 4.6e-60 236.5 140 78.6
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 5.7e-58 229.6 283 48.1
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 3.7e-57 226.9 119 86.6
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.3e-42 177.2 234 46.6
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 5.7e-42 176.4 360 33.3
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 5.3e-40 169.9 93 83.9
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 2.7e-36 157.5 369 27.1
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 1.5e-34 151.8 122 61.5
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 2.6e-34 151.0 566 25.1
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 2.0e-31 141.4 82 79.3
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 2.8e-25 120.9 99 63.6
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 2.7e-20 104.4 62 75.8
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 4.5e-15 87.0 55 72.7
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 5.9e-15 86.7 182 29.7
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.5e-13 81.3 60 60.0
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.3e-09 68.9 169 28.4
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 9.2e-08 62.8 45 64.4


User provided reference genes

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