Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G020630 Cucumis sativus L. HOM05D003434 ORTHO05D004465 2.4e-43 178.3 82 100.0
MELO3C015338.2 Cucumis melo HOM05D003434 ORTHO05D004465 5.1e-38 160.6 81 90.1
CsaV3_1G039130 Cucumis sativus L. HOM05D003434 ORTHO05D004465 5.1e-38 160.6 81 90.1
ClCG01G010880 Citrullus lanatus HOM05D003434 ORTHO05D004465 2.5e-37 158.3 81 87.7
Sed0012815 Sechium edule HOM05D003434 ORTHO05D004465 2.5e-37 158.3 81 87.7
Sed0008309 Sechium edule HOM05D003434 ORTHO05D004465 9.6e-37 156.4 81 86.4
THA.LOC104815549 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 4.8e-36 154.1 81 85.2
FAN25G0934 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.1e-35 152.9 81 85.2
Cpa.g.sc80.31 Carica papaya HOM05D003434 ORTHO05D004465 1.8e-35 152.1 81 85.2
ECA236G4345 Erigeron canadensis HOM05D003434 ORTHO05D004465 1.8e-35 152.1 79 87.3
FvH4_3g20570 Fragaria vesca HOM05D003434 ORTHO05D004465 1.8e-35 152.1 81 85.2
FAN11G3195 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.8e-35 152.1 81 85.2
FAN21G0310 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.8e-35 152.1 81 85.2
HanXRQChr10g0306991 Helianthus annuus HOM05D003434 ORTHO05D004465 1.8e-35 152.1 79 87.3
HanXRQChr12g0374331 Helianthus annuus HOM05D003434 ORTHO05D004465 1.8e-35 152.1 79 87.3
Lsat_1_v5_gn_7_105060 Lactuca sativa HOM05D003434 ORTHO05D004465 1.8e-35 152.1 79 87.3
RcHm_v2.0_Chr5g0034581 Rosa chinensis HOM05D003434 ORTHO05D004465 1.8e-35 152.1 81 85.2
Duzib213G0358 Durio zibethinus HOM05D003434 ORTHO05D004465 2.4e-35 151.8 81 84.0
Gohir.A11G282773 Gossypium hirsutum HOM05D003434 ORTHO05D004465 2.4e-35 151.8 81 84.0
Gohir.D11G296500 Gossypium hirsutum HOM05D003434 ORTHO05D004465 2.4e-35 151.8 81 84.0
Aa31LG8G2690 Aethionema arabicum HOM05D003434 ORTHO05D004465 3.1e-35 151.4 81 84.0
CARHR043150 Cardamine hirsuta HOM05D003434 ORTHO05D004465 3.1e-35 151.4 81 84.0
Thhalv10011666m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 3.1e-35 151.4 81 84.0
MD11G1241800 Malus domestica HOM05D003434 ORTHO05D004465 3.1e-35 151.4 81 85.2
Prupe.4G185500 Prunus persica HOM05D003434 ORTHO05D004465 3.1e-35 151.4 81 85.2
QL08p019759 Quercus lobata HOM05D003434 ORTHO05D004465 3.1e-35 151.4 73 94.5
COL.COLO4_09433 Corchorus olitorius HOM05D003434 ORTHO05D004465 4.0e-35 151.0 81 84.0
THA.LOC104818062 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 4.0e-35 151.0 81 84.0
Lsat_1_v5_gn_9_57521 Lactuca sativa HOM05D003434 ORTHO05D004465 5.3e-35 150.6 79 86.1
Lj1A848T59 Lonicera japonica HOM05D003434 ORTHO05D004465 5.3e-35 150.6 79 84.8
Nitab4.5_0000677g0140 Nicotiana tabacum HOM05D003434 ORTHO05D004465 5.3e-35 150.6 79 84.8
Thecc.07G077100 Theobroma cacao HOM05D003434 ORTHO05D004465 5.3e-35 150.6 81 82.7
Hma1.2p1_0400F.1_g144660 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 6.9e-35 150.2 81 81.5
Hma1.2p1_3282F.1_g334840 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 6.9e-35 150.2 81 81.5
MD03G1224000 Malus domestica HOM05D003434 ORTHO05D004465 6.9e-35 150.2 76 89.5
Duzib170G0474 Durio zibethinus HOM05D003434 ORTHO05D004465 9.0e-35 149.8 81 82.7
Cfa020548 Carpinus fangiana HOM05D003434 ORTHO05D004465 1.2e-34 149.4 76 88.2
CiPaw.11G173200 Carya illinoinensis HOM05D003434 ORTHO05D004465 1.2e-34 149.4 76 88.2
Haze_09473 Corylus avellana HOM05D003434 ORTHO05D004465 1.2e-34 149.4 76 88.2
Haze_09477 Corylus avellana HOM05D003434 ORTHO05D004465 1.2e-34 149.4 76 88.2
Sp1g39500 Schrenkiella parvula HOM05D003434 ORTHO05D004465 1.2e-34 149.4 81 81.5
Carub.0003s1518 Capsella rubella HOM05D003434 ORTHO05D004465 1.5e-34 149.1 81 80.2
Haze_07077 Corylus avellana HOM05D003434 ORTHO05D004465 1.5e-34 149.1 74 90.5
Thhalv10021159m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 1.5e-34 149.1 81 81.5
BcaB06g29579 Brassica carinata HOM05D003434 ORTHO05D004465 2.0e-34 148.7 76 85.5
CiPaw.12G120800 Carya illinoinensis HOM05D003434 ORTHO05D004465 2.0e-34 148.7 76 86.8
Ciclev10008977m.g Citrus clementina HOM05D003434 ORTHO05D004465 2.0e-34 148.7 81 82.7
Hma1.2p1_1789F.1_g302480 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.0e-34 148.7 81 80.2
Aa31LG10G2140 Aethionema arabicum HOM05D003434 ORTHO05D004465 2.6e-34 148.3 81 82.7
BcaB06g29576 Brassica carinata HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
BcaC01g03873 Brassica carinata HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
BcaC09g48510 Brassica carinata HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
A01p38760 Brassica napus HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
A03p39310 Brassica napus HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
A05p33960 Brassica napus HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
C01p49000 Brassica napus HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
C03p47690 Brassica napus HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
C05p51700 Brassica napus HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
BolC1t04864H Brassica oleracea HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
BolC3t17044H Brassica oleracea HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
BolC5t33857H Brassica oleracea HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
BraA01t03909Z Brassica rapa HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
BraA03t13081Z Brassica rapa HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
BraA05t22218Z Brassica rapa HOM05D003434 ORTHO05D004465 2.6e-34 148.3 76 85.5
Cc05_g12350 Coffea canephora HOM05D003434 ORTHO05D004465 2.6e-34 148.3 79 82.3
AL1G61260 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 3.4e-34 147.9 81 80.2
Carub.0001s4208 Capsella rubella HOM05D003434 ORTHO05D004465 3.4e-34 147.9 81 80.2
FAN16G2559 Fragaria x ananassa HOM05D003434 ORTHO05D004465 3.4e-34 147.9 81 82.7
Manes.12G076100 Manihot esculenta HOM05D003434 ORTHO05D004465 3.4e-34 147.9 81 81.5
Sp3g13710 Schrenkiella parvula HOM05D003434 ORTHO05D004465 3.4e-34 147.9 81 80.2
CSS0016315 Camellia sinensis var. sinensis HOM05D003434 ORTHO05D004465 4.4e-34 147.5 76 84.2
Potri.001G403100 Populus trichocarpa HOM05D003434 ORTHO05D004465 4.4e-34 147.5 76 85.5
AT1G52930 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 5.8e-34 147.1 81 79.0
BcaB04g20924 Brassica carinata HOM05D003434 ORTHO05D004465 5.8e-34 147.1 76 84.2
CANSAT78G2387 Cannabis sativa HOM05D003434 ORTHO05D004465 9.9e-34 146.4 81 81.5
Sabra11G0108200 Salix brachista HOM05D003434 ORTHO05D002822 9.9e-34 146.4 76 85.5
Hma1.2p1_2288F.1_g318950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.3e-33 146.0 81 79.0
MBI01_g15748_MAGBIO Magnolia biondii HOM05D003434 ORTHO05D004465 1.3e-33 146.0 74 89.2
Nn1g07032 Nelumbo nucifera HOM05D003434 ORTHO05D004465 1.3e-33 146.0 76 85.5
Sc21g0001090 Simmondsia chinensis HOM05D003434 ORTHO05D004465 1.3e-33 146.0 81 76.5
GSVIVG01028448001 Vitis vinifera HOM05D003434 ORTHO05D004465 1.3e-33 146.0 81 79.0
CARHR090510 Cardamine hirsuta HOM05D003434 ORTHO05D004465 1.7e-33 145.6 76 84.2
Potri.011G122200 Populus trichocarpa HOM05D003434 ORTHO05D004465 2.2e-33 145.2 76 84.2
TWI38G2119 Tripterygium wilfordii HOM05D003434 ORTHO05D004465 2.2e-33 145.2 81 77.8
Psat3g183280 Pisum sativum HOM05D003434 ORTHO05D004465 2.9e-33 144.8 81 77.8
Psat6g028560 Pisum sativum HOM05D003434 ORTHO05D004465 2.9e-33 144.8 81 77.8
Psat6g129960 Pisum sativum HOM05D003434 ORTHO05D004465 2.9e-33 144.8 81 77.8
TPR.G27919 Trifolium pratense HOM05D003434 ORTHO05D004465 2.9e-33 144.8 81 77.8
PGR083G2248 Punica granatum HOM05D003434 ORTHO05D004465 3.8e-33 144.4 81 79.0
TAR626G1243 Trochodendron aralioides HOM05D003434 ORTHO05D004465 3.8e-33 144.4 76 84.2
AL3G28010 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 4.9e-33 144.1 81 79.0
Lj8A158G80 Lonicera japonica HOM05D003434 ORTHO05D004465 4.9e-33 144.1 79 79.7
Oeu011677.2 Olea europaea HOM05D003434 ORTHO05D004465 4.9e-33 144.1 74 86.5
Ca_13044_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 6.4e-33 143.7 81 76.5
Sabra16G0264800 Salix brachista HOM05D003434 ORTHO05D004465 6.4e-33 143.7 74 87.8
SGA_v2.0_scaffold9G04937 Striga asiatica HOM05D003434 ORTHO05D004465 6.4e-33 143.7 74 86.5
Lalb_Chr04g0258261 Lupinus albus HOM05D003434 ORTHO05D004465 8.4e-33 143.3 76 81.6
Gorai.007G319600 Gossypium raimondii HOM05D003434 ORTHO05D004465 1.1e-32 142.9 93 73.1
ClCG03G016840 Citrullus lanatus HOM05D003434 ORTHO05D004465 1.4e-32 142.5 112 63.4
Dinv08315 Davidia involucrata HOM05D003434 ORTHO05D002822 1.4e-32 142.5 76 84.2
Eucgr.F01099 Eucalyptus grandis HOM05D003434 ORTHO05D004465 1.4e-32 142.5 74 86.5
Glyma.08G255000 Glycine max HOM05D003434 ORTHO05D004465 1.4e-32 142.5 81 76.5
Lj1g0009928 Lotus japonicus HOM05D003434 ORTHO05D004465 1.4e-32 142.5 81 76.5
Medtr1g012990 Medicago truncatula HOM05D003434 ORTHO05D004465 1.4e-32 142.5 81 76.5
Medtr7g069430 Medicago truncatula HOM05D003434 ORTHO05D004465 1.4e-32 142.5 81 76.5
Nitab4.5_0000826g0070 Nicotiana tabacum HOM05D003434 ORTHO05D004465 1.4e-32 142.5 79 79.7
AT3G15460 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 1.9e-32 142.1 81 77.8
Nitab4.5_0001618g0180 Nicotiana tabacum HOM05D003434 ORTHO05D004465 1.9e-32 142.1 79 78.5
PSO832G4191 Papaver somniferum HOM05D003434 ORTHO05D004465 1.9e-32 142.1 76 77.6
Glyma.18G278000 Glycine max HOM05D003434 ORTHO05D004465 2.4e-32 141.7 76 80.3
TAR624G0430 Trochodendron aralioides HOM05D003434 ORTHO05D004465 2.4e-32 141.7 76 82.9
Aqoxy4G01062 Aquilegia oxysepala HOM05D003434 ORTHO05D004465 3.2e-32 141.4 76 81.6
CAN.G1237.13 Capsicum annuum HOM05D003434 ORTHO05D004465 3.2e-32 141.4 79 78.5
Ca_05552_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 3.2e-32 141.4 81 75.3
PSO210G2253 Papaver somniferum HOM05D003434 ORTHO05D004465 3.2e-32 141.4 76 76.3
Hund24214 Selenicereus undatus HOM05D003434 ORTHO05D004465 3.2e-32 141.4 74 83.8
Lalb_Chr17g0340551 Lupinus albus HOM05D003434 ORTHO05D004465 4.2e-32 141.0 76 78.9
PSO017G4384 Papaver somniferum HOM05D003434 ORTHO05D004465 4.2e-32 141.0 76 77.6
PSO170G0766 Papaver somniferum HOM05D003434 ORTHO05D004465 4.2e-32 141.0 76 77.6
Actinidia09989 Actinidia chinensis HOM05D003434 ORTHO05D004465 5.4e-32 140.6 76 82.9
arahy.Tifrunner.gnm1.ann1.L3HXPU Arachis hypogaea HOM05D003434 ORTHO05D004465 5.4e-32 140.6 76 78.9
arahy.Tifrunner.gnm1.ann1.LC97RS Arachis hypogaea HOM05D003434 ORTHO05D004465 5.4e-32 140.6 76 78.9
Solyc04g016380.3 Solanum lycopersicum HOM05D003434 ORTHO05D004465 5.4e-32 140.6 74 83.8
Sopen04g008470 Solanum pennellii HOM05D003434 ORTHO05D004465 5.4e-32 140.6 74 83.8
PGSC0003DMG400012714 Solanum tuberosum HOM05D003434 ORTHO05D004465 5.4e-32 140.6 74 83.8
unitig_0.g2416 Utricularia gibba HOM05D003434 ORTHO05D004465 5.4e-32 140.6 74 85.1
VMungo1383G3569 Vigna mungo HOM05D003434 ORTHO05D004465 5.4e-32 140.6 81 75.3
Peaxi162Scf00130g00826 Petunia axillaris HOM05D003434 ORTHO05D004465 7.1e-32 140.2 79 77.2
Rhsim06G0196400 Rhododendron simsii HOM05D003434 ORTHO05D004465 1.2e-31 139.4 74 86.5
vmacro19412 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 1.2e-31 139.4 74 86.5
SalBow4G3038 Salvia bowleyana HOM05D003434 ORTHO05D004465 2.1e-31 138.7 74 85.1
CDE07G1591 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 2.7e-31 138.3 76 81.6
Phvul.001G137800 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.7e-31 138.3 74 79.7
Phvul.001G137900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.7e-31 138.3 74 79.7
Phvul.001G138125 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.7e-31 138.3 74 79.7
Phvul.008G022950 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.7e-31 138.3 74 79.7
Phvul.011G077301 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.7e-31 138.3 74 79.7
vmacro11838 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 3.5e-31 137.9 74 85.1
Glyma.02G114000 Glycine max HOM05D003434 ORTHO05D004465 4.6e-31 137.5 81 75.3
Oeu019344.1 Olea europaea HOM05D003434 ORTHO05D004465 4.6e-31 137.5 74 83.8
Peaxi162Scf00069g00118 Petunia axillaris HOM05D003434 ORTHO05D004465 6.0e-31 137.1 79 78.5
DCAR_019543 Daucus carota HOM05D003434 ORTHO05D004465 7.8e-31 136.7 79 73.4
Os02g0591800 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D004465 2.3e-30 135.2 76 73.7
AUR62015117 Chenopodium quinoa HOM05D003434 ORTHO05D004465 3.0e-30 134.8 74 78.4
AUR62017579 Chenopodium quinoa HOM05D003434 ORTHO05D004465 3.0e-30 134.8 74 78.4
DCAR_020982 Daucus carota HOM05D003434 ORTHO05D004465 6.6e-30 133.7 79 73.4
Zm00001eb245760 Zea mays HOM05D003434 ORTHO05D004465 1.9e-29 132.1 76 73.7
SEGI_09483 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 2.5e-29 131.7 76 76.3
EL10Ac9g22818 Beta vulgaris HOM05D003434 ORTHO05D004465 3.3e-29 131.3 74 75.7
ATR0605G144 Amborella trichopoda HOM05D003434 ORTHO05D004465 5.6e-29 130.6 76 75.0
Ah.01g001850 Amaranthus hybridus HOM05D003434 ORTHO05D004465 7.3e-29 130.2 81 69.1
Gohir.A04G028400 Gossypium hirsutum HOM05D003434 ORTHO05D004465 1.2e-26 122.9 81 72.8
SMO353G0304 Selaginella moellendorffii HOM05D003434 ORTHO05D004465 2.0e-26 122.1 76 69.7
Pp3c16_10600 Physcomitrium patens HOM05D003434 ORTHO05D004465 3.8e-25 117.9 75 69.3
Mapoly0044s0007 Marchantia polymorpha HOM05D003434 ORTHO05D004465 4.9e-25 117.5 74 64.9
AagrBONN_evm.TU.Sc2ySwM_344.2838 Anthoceros agrestis HOM05D003434 ORTHO05D004465 1.0e-22 109.8 76 63.2
Cre02.g095400 Chlamydomonas reinhardtii HOM05D003434 ORTHO05D004465 6.9e-19 97.1 74 54.1
Haze_26676 Corylus avellana HOM05D003434 ORTHO05D004465 1.3e-17 92.8 74 54.1
TPR.G38897 Trifolium pratense HOM05D003434 ORTHO05D004465 2.2e-17 92.0 53 71.7
MCO15G262 Micromonas commoda HOM05D003434 ORTHO05D004465 1.4e-16 89.4 74 52.7
PRCOL_00005895 Prasinoderma coloniale HOM05D003434 ORTHO05D004465 9.3e-16 86.7 74 52.7
SalBow6G7052 Salvia bowleyana HOM05D003434 ORTHO05D004465 9.3e-16 86.7 46 80.4
TPR.G685 Trifolium pratense HOM05D003434 ORTHO05D004465 2.7e-15 85.1 42 85.7
Phvul.008G022900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.5e-13 78.6 40 82.5
Cfa025477 Carpinus fangiana HOM05D003434 ORTHO05D004465 4.3e-13 77.8 74 44.6
MELO3C034411.2 Cucumis melo HOM05D003434 ORTHO05D000610 5.7e-13 77.4 47 78.7
Migut.H01924 Erythranthe guttata HOM05D003434 ORTHO05D004465 1.3e-12 76.3 40 87.5
TPR.G10880 Trifolium pratense HOM05D003434 ORTHO05D004465 1.3e-12 76.3 39 84.6
MELO3C030248.2 Cucumis melo HOM05D003434 ORTHO05D000610 2.8e-12 75.1 39 89.7
Hma1.2p1_0687F.1_g203600 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.8e-12 75.1 38 81.6
Zm00001eb183430 Zea mays HOM05D003434 ORTHO05D004465 2.8e-12 75.1 40 82.5
HPP92_020071 Vanilla planifolia HOM05D003434 ORTHO05D004465 4.8e-12 74.3 39 87.2
HPP92_020079 Vanilla planifolia HOM05D003434 ORTHO05D004465 5.8e-10 67.4 42 64.3
CDE04G2177 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 1.3e-09 66.2 37 70.3
SEGI_41466 Sequoiadendron giganteum HOM05D003434 ORTHO05D000001 2.9e-09 65.1 57 59.6
Phvul.008G023000 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 3.8e-09 64.7 35 74.3
CBR_g29800 Chara braunii HOM05D003434 ORTHO05D004465 4.6e-07 57.8 36 58.3
MELO3C031483.2 Cucumis melo HOM05D003434 ORTHO05D000610 1.0e-06 56.6 28 92.9


User provided reference genes

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