Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G013920 Cucumis sativus L. HOM05D000904 ORTHO05D005281 3.7e-52 208.0 110 100.0
MELO3C026455.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.9e-40 169.1 100 91.0
ClCG11G000390 Citrullus lanatus HOM05D000904 ORTHO05D005281 7.5e-37 157.1 101 83.2
ClCG11G000350 Citrullus lanatus HOM05D000904 ORTHO05D005281 2.8e-31 138.7 86 83.7
CsaV3_1G039120 Cucumis sativus L. HOM05D000904 ORTHO05D005281 6.4e-28 127.5 100 69.0
CsaV3_1G039100 Cucumis sativus L. HOM05D000904 ORTHO05D005281 4.1e-27 124.8 100 66.0
CsaV3_1G039110 Cucumis sativus L. HOM05D000904 ORTHO05D005281 5.4e-27 124.4 100 65.0
MELO3C026468.2 Cucumis melo HOM05D000904 ORTHO05D005281 2.5e-24 115.5 83 72.3
Sed0008301 Sechium edule HOM05D000904 ORTHO05D005281 7.3e-24 114.0 96 62.5
MELO3C015337.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.2e-23 113.2 102 65.7
CsaV3_5G013950 Cucumis sativus L. HOM05D000904 ORTHO05D005281 3.6e-23 111.7 82 68.3
Sed0015991 Sechium edule HOM05D000904 ORTHO05D005281 8.1e-23 110.5 89 66.3
TAR381G0334 Trochodendron aralioides HOM05D000904 ORTHO05D005281 5.2e-22 107.8 93 61.3
CSS0036471 Camellia sinensis var. sinensis HOM05D000904 ORTHO05D005281 1.5e-21 106.3 94 62.8
Sed0009620 Sechium edule HOM05D000904 ORTHO05D005281 1.5e-21 106.3 85 61.2
Sed0015061 Sechium edule HOM05D000904 ORTHO05D005281 1.5e-21 106.3 81 71.6
Atru.chr6.331 Acer truncatum HOM05D000904 ORTHO05D005281 2.6e-21 105.5 84 67.9
AT1G10310 Arabidopsis thaliana HOM05D000904 ORTHO05D005281 2.6e-21 105.5 99 61.6
Cfa004449 Carpinus fangiana HOM05D000904 ORTHO05D005281 3.4e-21 105.1 83 67.5
SGA_v2.0_scaffold165G38271 Striga asiatica HOM05D000904 ORTHO05D005281 3.4e-21 105.1 87 65.5
Glyma.03G006500 Glycine max HOM05D000904 ORTHO05D005281 4.4e-21 104.8 82 69.5
Duzib192G0673 Durio zibethinus HOM05D000904 ORTHO05D005281 5.8e-21 104.4 93 59.1
Eucgr.I02792 Eucalyptus grandis HOM05D000904 ORTHO05D005281 5.8e-21 104.4 89 62.9
Lj4g0025399 Lotus japonicus HOM05D000904 ORTHO05D005281 5.8e-21 104.4 84 63.1
Manes.07G028700 Manihot esculenta HOM05D000904 ORTHO05D005281 5.8e-21 104.4 82 65.9
Actinidia26192 Actinidia chinensis HOM05D000904 ORTHO05D005281 9.9e-21 103.6 95 62.1
AL1G21040 Arabidopsis lyrata HOM05D000904 ORTHO05D005281 9.9e-21 103.6 99 60.6
Hund15393 Selenicereus undatus HOM05D000904 ORTHO05D005281 9.9e-21 103.6 93 58.1
Lj5A282G72 Lonicera japonica HOM05D000904 ORTHO05D005281 1.3e-20 103.2 91 63.7
MELO3C026450.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.7e-20 102.8 89 62.9
Thecc.06G016900 Theobroma cacao HOM05D000904 ORTHO05D005281 1.7e-20 102.8 83 63.9
TPR.G5962 Trifolium pratense HOM05D000904 ORTHO05D005281 1.7e-20 102.8 85 63.5
Migut.B00726 Erythranthe guttata HOM05D000904 ORTHO05D005281 2.2e-20 102.4 87 63.2
COL.COLO4_22860 Corchorus olitorius HOM05D000904 ORTHO05D005281 2.9e-20 102.1 99 57.6
Eucgr.I02794 Eucalyptus grandis HOM05D000904 ORTHO05D005281 2.9e-20 102.1 87 65.5
Aa31LG1G4630 Aethionema arabicum HOM05D000904 ORTHO05D005281 3.8e-20 101.7 83 67.5
Nn5g27347 Nelumbo nucifera HOM05D000904 ORTHO05D005281 3.8e-20 101.7 91 61.5
arahy.Tifrunner.gnm1.ann1.87EYQC Arachis hypogaea HOM05D000904 ORTHO05D005281 4.9e-20 101.3 87 64.4
Ciclev10002114m.g Citrus clementina HOM05D000904 ORTHO05D005281 4.9e-20 101.3 83 66.3
Oeu043613.1 Olea europaea HOM05D000904 ORTHO05D005281 4.9e-20 101.3 98 60.2
Gohir.A10G003300 Gossypium hirsutum HOM05D000904 ORTHO05D005281 6.4e-20 100.9 94 58.5
Gohir.D10G003300 Gossypium hirsutum HOM05D000904 ORTHO05D005281 6.4e-20 100.9 94 58.5
Gorai.011G003700 Gossypium raimondii HOM05D000904 ORTHO05D005281 6.4e-20 100.9 94 58.5
Sabra01G0173500 Salix brachista HOM05D000904 ORTHO05D005281 6.4e-20 100.9 83 65.1
FvH4_5g27970 Fragaria vesca HOM05D000904 ORTHO05D005281 8.4e-20 100.5 93 61.3
FAN04G1787 Fragaria x ananassa HOM05D000904 ORTHO05D005281 8.4e-20 100.5 93 61.3
FAN18G2944 Fragaria x ananassa HOM05D000904 ORTHO05D005281 8.4e-20 100.5 93 61.3
TWI14G0421 Tripterygium wilfordii HOM05D000904 ORTHO05D005281 8.4e-20 100.5 84 63.1
Dinv29675 Davidia involucrata HOM05D000904 ORTHO05D005281 1.1e-19 100.1 94 59.6
arahy.Tifrunner.gnm1.ann1.R3DQKX Arachis hypogaea HOM05D000904 ORTHO05D005281 1.4e-19 99.8 87 63.2
CARHR010440 Cardamine hirsuta HOM05D000904 ORTHO05D005281 1.4e-19 99.8 99 58.6
ClCG11G000320 Citrullus lanatus HOM05D000904 ORTHO05D005281 1.4e-19 99.8 84 65.5
CsaV3_5G015540 Cucumis sativus L. HOM05D000904 ORTHO05D005281 1.9e-19 99.4 82 64.6
AUR62022331 Chenopodium quinoa HOM05D000904 ORTHO05D005281 2.4e-19 99.0 89 55.1
Nitab4.5_0008306g0050 Nicotiana tabacum HOM05D000904 ORTHO05D005281 2.4e-19 99.0 101 56.4
Phvul.003G075700 Phaseolus vulgaris HOM05D000904 ORTHO05D005281 2.4e-19 99.0 83 59.0
Sp1g08910 Schrenkiella parvula HOM05D000904 ORTHO05D005281 2.4e-19 99.0 83 63.9
Sed0012472 Sechium edule HOM05D000904 ORTHO05D005281 2.4e-19 99.0 88 63.6
Sed0023226 Sechium edule HOM05D000904 ORTHO05D005281 3.2e-19 98.6 87 60.9
THA.LOC104810194 Tarenaya hassleriana HOM05D000904 ORTHO05D005281 3.2e-19 98.6 83 62.7
THA.LOC104821580 Tarenaya hassleriana HOM05D000904 ORTHO05D005281 3.2e-19 98.6 83 62.7
CsaV3_5G013960 Cucumis sativus L. HOM05D000904 ORTHO05D005281 4.1e-19 98.2 88 61.4
DCAR_031994 Daucus carota HOM05D000904 ORTHO05D005281 4.1e-19 98.2 86 60.5
Hma1.2p1_0052F.1_g029960 Hydrangea macrophylla HOM05D000904 ORTHO05D005281 4.1e-19 98.2 91 59.3
RcHm_v2.0_Chr7g0220131 Rosa chinensis HOM05D000904 ORTHO05D005281 4.1e-19 98.2 91 59.3
unitig_37.g12401 Utricularia gibba HOM05D000904 ORTHO05D005281 4.1e-19 98.2 104 51.9
ClCG11G000420 Citrullus lanatus HOM05D000904 ORTHO05D005281 5.4e-19 97.8 75 65.3
Migut.B00727 Erythranthe guttata HOM05D000904 ORTHO05D005281 5.4e-19 97.8 85 61.2
Thhalv10008625m.g Eutrema salsugineum HOM05D000904 ORTHO05D005281 5.4e-19 97.8 83 63.9
GSVIVG01023151001 Vitis vinifera HOM05D000904 ORTHO05D005281 7.1e-19 97.4 94 56.4
CsaV3_5G014070 Cucumis sativus L. HOM05D000904 ORTHO05D005281 9.2e-19 97.1 75 64.0
CsaV3_UNG162230 Cucumis sativus L. HOM05D000904 ORTHO05D005281 9.2e-19 97.1 75 64.0
Sed0005829 Sechium edule HOM05D000904 ORTHO05D005281 9.2e-19 97.1 81 66.7
VMungo1215G2691 Vigna mungo HOM05D000904 ORTHO05D005281 9.2e-19 97.1 83 61.4
PGSC0003DMG401024871 Solanum tuberosum HOM05D000904 ORTHO05D005281 1.2e-18 96.7 103 53.4
vmacro19833 Vaccinium macrocarpon HOM05D000904 ORTHO05D005281 1.2e-18 96.7 96 56.2
MSTRG.16471 Avicennia marina HOM05D000904 ORTHO05D005281 1.6e-18 96.3 104 51.0
CiPaw.05G002000 Carya illinoinensis HOM05D000904 ORTHO05D005281 1.6e-18 96.3 83 62.7
Nitab4.5_0001057g0010 Nicotiana tabacum HOM05D000904 ORTHO05D005281 1.6e-18 96.3 100 56.0
Prupe.1G584900 Prunus persica HOM05D000904 ORTHO05D005281 1.6e-18 96.3 83 62.7
Carub.0001s0972 Capsella rubella HOM05D000904 ORTHO05D005281 2.1e-18 95.9 83 62.7
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.1e-18 95.9 80 62.5
CsaV3_5G015620 Cucumis sativus L. HOM05D000904 ORTHO05D005281 2.1e-18 95.9 80 58.8
Lsat_1_v5_gn_9_121801 Lactuca sativa HOM05D000904 ORTHO05D005281 2.1e-18 95.9 89 57.3
HanXRQChr12g0381691 Helianthus annuus HOM05D000904 ORTHO05D005281 3.5e-18 95.1 84 59.5
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 4.6e-18 94.7 97 52.6
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 4.6e-18 94.7 97 52.6
CDE02G4514 Ceratophyllum demersum HOM05D000904 ORTHO05D005281 4.6e-18 94.7 85 58.8
MD08G1247500 Malus domestica HOM05D000904 ORTHO05D005281 4.6e-18 94.7 83 59.0
Potri.004G228533 Populus trichocarpa HOM05D000904 ORTHO05D005281 6.0e-18 94.4 81 63.0
SMO196G0063 Selaginella moellendorffii HOM05D000904 ORTHO05D005281 6.0e-18 94.4 83 60.2
Ah.09g231850 Amaranthus hybridus HOM05D000904 ORTHO05D005281 7.8e-18 94.0 83 60.2
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 1.0e-17 93.6 97 51.5
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 1.0e-17 93.6 97 51.5
MELO3C022941.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.0e-17 93.6 80 56.2
Sc03g0004970 Simmondsia chinensis HOM05D000904 ORTHO05D005281 1.0e-17 93.6 92 54.3
CANSAT56G0278 Cannabis sativa HOM05D000904 ORTHO05D005281 1.3e-17 93.2 93 57.0
MELO3C025330.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.3e-17 93.2 77 61.0
Medtr4g134660 Medicago truncatula HOM05D000904 ORTHO05D005281 1.3e-17 93.2 77 63.6
CAN.G855.46 Capsicum annuum HOM05D000904 ORTHO05D005281 1.7e-17 92.8 103 51.5
PSO210G7568 Papaver somniferum HOM05D000904 ORTHO05D005281 1.7e-17 92.8 100 51.0
Solyc01g103100.3 Solanum lycopersicum HOM05D000904 ORTHO05D005281 1.7e-17 92.8 101 55.4
Sopen01g045520 Solanum pennellii HOM05D000904 ORTHO05D005281 1.7e-17 92.8 101 55.4
Cpa.g.sc192.24 Carica papaya HOM05D000904 ORTHO05D005281 3.0e-17 92.0 83 56.6
PSO447G0087 Papaver somniferum HOM05D000904 ORTHO05D005281 3.0e-17 92.0 100 51.0
PSO210G6890 Papaver somniferum HOM05D000904 ORTHO05D005281 3.9e-17 91.7 100 50.0
Psat4g001040 Pisum sativum HOM05D000904 ORTHO05D005281 3.9e-17 91.7 78 61.5
Ah.14g085600 Amaranthus hybridus HOM05D000904 ORTHO05D005281 5.1e-17 91.3 82 56.1
ATR1089G061 Amborella trichopoda HOM05D000904 ORTHO05D005281 6.6e-17 90.9 85 58.8
MELO3C027175.2 Cucumis melo HOM05D000904 ORTHO05D005281 6.6e-17 90.9 82 58.5
BcaNung05165 Brassica carinata HOM05D000904 ORTHO05D005281 8.7e-17 90.5 83 56.6
BcaNung05227 Brassica carinata HOM05D000904 ORTHO05D005281 8.7e-17 90.5 86 58.1
ClCG11G000340 Citrullus lanatus HOM05D000904 ORTHO05D005281 8.7e-17 90.5 82 59.8
Lalb_Chr07g0176801 Lupinus albus HOM05D000904 ORTHO05D005281 8.7e-17 90.5 83 57.8
RcHm_v2.0_Chr7g0220301 Rosa chinensis HOM05D000904 ORTHO05D005281 8.7e-17 90.5 91 54.9
Aqoxy5G01864 Aquilegia oxysepala HOM05D000904 ORTHO05D005281 1.1e-16 90.1 84 61.9
Medtr4g066050 Medicago truncatula HOM05D000904 ORTHO05D005281 3.3e-16 88.6 79 62.0
SEGI_19846 Sequoiadendron giganteum HOM05D000904 ORTHO05D005281 5.6e-16 87.8 81 55.6
ECA248G0469 Erigeron canadensis HOM05D000904 ORTHO05D005281 1.6e-15 86.3 90 55.6
HPP92_024399 Vanilla planifolia HOM05D000904 ORTHO05D005281 2.8e-15 85.5 89 49.4
CsaV3_5G015550 Cucumis sativus L. HOM05D000904 ORTHO05D005281 3.6e-15 85.1 80 53.8
ClCG11G000250 Citrullus lanatus HOM05D000904 ORTHO05D005281 6.2e-15 84.3 61 68.9
Os02g0557700 Oryza sativa ssp. japonica HOM05D000904 ORTHO05D005281 1.4e-14 83.2 84 52.4
Zm00001eb243890 Zea mays HOM05D000904 ORTHO05D005281 2.4e-14 82.4 84 52.4
Eucgr.I02793 Eucalyptus grandis HOM05D000904 ORTHO05D005281 9.0e-14 80.5 108 47.2
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 1.2e-13 80.1 83 55.4
Cc02_g23530 Coffea canephora HOM05D000904 ORTHO05D005281 3.4e-13 78.6 89 52.8
Medtr4g070490 Medicago truncatula HOM05D000904 ORTHO05D005281 4.4e-13 78.2 85 55.3
Dinv29676 Davidia involucrata HOM05D000904 ORTHO05D005281 6.4e-12 74.3 67 58.2
Rhsim05G0115700 Rhododendron simsii HOM05D000904 ORTHO05D005281 8.4e-12 73.9 72 55.6
ATR0189G001 Amborella trichopoda HOM05D000904 ORTHO05D005281 4.2e-11 71.6 62 58.1
QL02p103229 Quercus lobata HOM05D000001 ORTHO05D000003 2.1e-10 69.3 49 69.4
AUR62034943 Chenopodium quinoa HOM05D000904 ORTHO05D005281 1.7e-09 66.2 69 46.4
DCAR_031995 Daucus carota HOM05D000904 ORTHO05D005281 3.0e-09 65.5 47 66.0
Medtr4g070500 Medicago truncatula HOM05D000904 ORTHO05D005281 5.3e-06 54.7 36 72.2


User provided reference genes

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