Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 1.1e-125 453.4 234 100.0
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 1.0e-115 420.2 234 93.6
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 1.5e-111 406.4 234 90.2
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.0e-99 367.1 241 81.7
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.2e-87 327.0 228 76.3
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 1.2e-87 327.0 183 88.0
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 1.5e-87 326.6 195 85.1
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 1.5e-87 326.6 206 79.1
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.0e-87 326.2 194 84.0
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.0e-87 326.2 243 74.1
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.4e-87 325.1 181 88.4
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 7.6e-87 324.3 233 75.1
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 7.6e-87 324.3 243 73.7
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.7e-86 323.2 227 75.8
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.7e-86 323.2 227 75.8
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 1.7e-86 323.2 181 88.4
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 2.2e-86 322.8 244 71.7
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 2.2e-86 322.8 181 87.8
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.2e-86 322.8 240 72.1
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.9e-86 322.4 237 74.7
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.8e-86 322.0 234 74.8
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 3.8e-86 322.0 240 72.9
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 3.8e-86 322.0 243 72.0
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.1e-85 320.5 197 81.7
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.4e-85 320.1 233 75.5
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 1.4e-85 320.1 233 74.2
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.4e-85 320.1 228 75.4
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.9e-85 319.7 234 71.4
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 2.4e-85 319.3 223 74.9
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 2.4e-85 319.3 210 78.6
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 2.4e-85 319.3 237 72.6
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 3.2e-85 318.9 231 73.6
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.2e-85 318.9 180 86.1
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 3.2e-85 318.9 192 81.2
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 3.2e-85 318.9 225 73.8
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 4.2e-85 318.5 214 76.6
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 5.4e-85 318.2 184 86.4
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 7.1e-85 317.8 164 92.1
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 7.1e-85 317.8 225 74.2
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 7.1e-85 317.8 223 74.4
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 9.3e-85 317.4 233 75.1
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 9.3e-85 317.4 195 81.5
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.6e-84 316.6 192 84.4
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.6e-84 316.6 231 71.9
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.6e-84 316.6 201 80.1
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.6e-84 316.6 239 72.8
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 2.7e-84 315.8 227 73.6
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 3.5e-84 315.5 165 92.7
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 3.5e-84 315.5 229 73.4
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.5e-84 315.5 214 77.6
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 3.5e-84 315.5 229 73.8
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 3.5e-84 315.5 239 69.9
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 4.6e-84 315.1 235 72.8
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 6.0e-84 314.7 207 77.8
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 6.0e-84 314.7 245 71.8
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 6.0e-84 314.7 232 73.7
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 7.8e-84 314.3 222 74.3
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 7.8e-84 314.3 224 74.1
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 7.8e-84 314.3 242 69.8
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.0e-83 313.9 233 71.7
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.0e-83 313.9 174 86.8
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 1.0e-83 313.9 225 74.2
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 1.3e-83 313.5 239 67.8
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.3e-83 313.5 239 71.1
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.3e-83 313.5 235 71.9
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 1.7e-83 313.2 235 73.2
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.7e-83 313.2 226 73.9
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 1.7e-83 313.2 243 72.0
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 2.3e-83 312.8 229 74.2
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 2.3e-83 312.8 231 71.9
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.3e-83 312.8 198 78.8
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 2.3e-83 312.8 242 70.2
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.3e-83 312.8 242 69.4
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 2.3e-83 312.8 164 90.9
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 3.0e-83 312.4 229 71.2
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 3.9e-83 312.0 229 73.8
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.9e-83 312.0 231 74.0
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 3.9e-83 312.0 206 78.2
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.9e-83 312.0 228 71.5
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 1.5e-82 310.1 251 66.1
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.9e-82 309.7 229 72.5
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 2.5e-82 309.3 227 72.7
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 3.3e-82 308.9 176 84.7
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 5.6e-82 308.1 208 77.9
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 5.6e-82 308.1 243 70.0
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 7.3e-82 307.8 229 73.4
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 7.3e-82 307.8 229 73.4
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 9.6e-82 307.4 227 74.0
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.3e-81 307.0 228 73.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.3e-81 307.0 239 70.7
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.6e-81 306.6 231 71.9
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.6e-81 306.6 240 70.4
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 1.6e-81 306.6 228 71.9
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.6e-81 306.6 181 82.3
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.1e-81 306.2 233 71.7
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 2.1e-81 306.2 231 69.7
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 5.3e-80 301.6 243 69.1
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 5.3e-80 301.6 246 67.1
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 6.9e-80 301.2 225 70.2
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 9.0e-80 300.8 225 71.6
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 5.8e-79 298.1 231 67.5
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 4.9e-78 295.0 180 80.6
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 6.4e-78 294.7 228 69.7
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.1e-77 293.9 184 77.2
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.9e-77 293.1 207 72.9
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 3.2e-77 292.4 218 71.6
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 2.7e-76 289.3 221 71.5
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.9e-74 283.1 229 67.7
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 4.8e-73 278.5 184 71.7
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 6.2e-73 278.1 179 78.2
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 2.6e-71 272.7 278 58.6
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.6e-68 263.5 199 67.3
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.8e-67 260.0 216 65.3
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.3e-67 259.6 224 65.2
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 3.3e-66 255.8 179 65.4
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 2.1e-65 253.1 240 61.2
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 2.8e-65 252.7 241 61.4
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 4.5e-63 245.4 237 59.9
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 4.9e-62 241.9 187 63.6
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 3.9e-59 232.3 208 64.9
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 1.1e-56 224.2 122 89.3
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 5.9e-47 191.8 171 62.0
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 3.8e-46 189.1 112 87.5
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.4e-45 187.2 175 62.9
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.0e-43 181.0 162 63.0
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.7e-41 173.7 156 63.5
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 5.3e-40 168.7 104 79.8
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 6.9e-40 168.3 104 78.8
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 9.1e-40 167.9 102 79.4
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 2.2e-38 163.3 148 60.1
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.8e-32 143.7 134 64.9
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 9.1e-32 141.4 82 85.4
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 2.9e-30 136.3 124 58.9
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 3.8e-30 136.0 78 85.9
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.1e-29 134.4 197 38.1
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.4e-27 127.5 75 84.0
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.2e-27 125.6 71 90.1
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.2e-21 106.3 77 72.7
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.2e-15 87.8 49 83.7
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.6e-15 87.4 76 60.5
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.6e-15 87.4 92 54.3
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.7e-10 68.9 47 68.1
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 4.1e-08 62.8 32 84.4
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.6e-07 60.8 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.6e-07 60.8 28 89.3
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 1.0e-06 58.2 114 40.4


User provided reference genes

Program Settings