Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 3.5e-149 531.9 342 100.0
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 5.2e-145 518.1 351 96.0
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 1.1e-137 493.8 362 90.6
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.3e-135 486.9 342 89.2
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.4e-128 462.2 332 82.2
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 4.4e-128 461.8 352 83.2
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.8e-127 458.8 352 83.0
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.9e-126 456.4 240 94.2
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 2.4e-126 456.1 240 93.8
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 3.2e-126 455.7 240 93.3
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 4.2e-126 455.3 346 85.0
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.1e-126 454.5 333 83.2
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 7.1e-126 454.5 240 92.9
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 9.3e-126 454.1 240 93.8
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 9.3e-126 454.1 240 93.8
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 1.6e-125 453.4 240 93.3
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 2.1e-125 453.0 240 93.3
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 3.9e-124 448.7 333 83.5
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 6.6e-124 448.0 239 92.9
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 8.7e-124 447.6 332 84.6
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 2.5e-123 446.0 240 92.9
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.3e-123 445.7 357 84.9
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.3e-123 444.5 342 80.7
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 9.6e-123 444.1 237 93.2
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 1.3e-122 443.7 330 86.1
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 1.6e-122 443.4 239 91.6
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 1.6e-122 443.4 330 80.0
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 2.1e-122 443.0 241 90.9
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 2.1e-122 443.0 337 83.7
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.1e-122 443.0 342 80.1
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 2.1e-122 443.0 240 90.8
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.8e-122 442.6 241 90.5
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 6.2e-122 441.4 360 81.9
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.4e-121 440.3 240 90.8
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.4e-121 440.3 240 90.8
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 1.4e-121 440.3 230 94.3
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 2.4e-121 439.5 233 92.7
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 3.1e-121 439.1 241 90.9
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 6.9e-121 438.0 330 81.2
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 9.0e-121 437.6 240 90.8
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.5e-120 436.8 344 80.2
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.6e-120 436.0 239 90.4
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 2.6e-120 436.0 344 80.8
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 2.6e-120 436.0 239 91.2
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 4.5e-120 435.3 345 77.7
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 1.3e-119 433.7 346 78.6
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 2.2e-119 433.0 229 93.0
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 4.9e-119 431.8 240 88.3
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 6.4e-119 431.4 239 90.0
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 6.4e-119 431.4 240 88.3
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.9e-118 429.9 222 95.0
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.9e-118 429.9 347 78.7
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 2.4e-118 429.5 220 96.4
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 2.4e-118 429.5 241 90.0
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 4.2e-118 428.7 240 89.2
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 5.4e-118 428.3 234 90.6
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 5.4e-118 428.3 234 90.6
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 5.4e-118 428.3 345 79.7
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 9.3e-118 427.6 239 89.1
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 4.6e-117 425.2 234 90.2
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 6.0e-117 424.9 339 79.4
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 7.9e-117 424.5 235 90.2
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 1.0e-116 424.1 222 93.2
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.3e-116 423.7 243 88.5
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.3e-116 423.7 243 88.5
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.8e-116 423.3 242 88.8
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 1.8e-116 423.3 241 88.8
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 2.3e-116 422.9 235 89.4
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 2.3e-116 422.9 222 93.7
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 3.0e-116 422.5 240 88.3
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 6.7e-116 421.4 221 93.7
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 8.7e-116 421.0 242 88.8
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 8.7e-116 421.0 220 93.2
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 1.5e-115 420.2 220 93.6
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 1.9e-115 419.9 342 79.8
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.8e-114 416.0 219 91.8
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.1e-113 414.1 228 89.5
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 1.8e-113 413.3 228 89.0
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.2e-112 410.6 228 89.9
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 1.5e-112 410.2 224 90.2
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 3.4e-112 409.1 221 90.5
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 1.3e-111 407.1 233 87.1
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 1.7e-111 406.8 231 87.4
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 3.8e-111 405.6 230 87.4
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 4.9e-111 405.2 228 87.7
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 8.4e-111 404.4 237 87.3
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 2.4e-110 402.9 228 87.3
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 2.1e-109 399.8 231 84.8
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 2.1e-109 399.8 231 84.8
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 2.7e-109 399.4 231 84.8
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 2.7e-109 399.4 231 84.8
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 4.6e-109 398.7 209 93.8
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 6.0e-109 398.3 424 63.0
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 7.9e-109 397.9 395 65.8
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.0e-108 397.5 241 82.6
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.3e-108 396.4 233 85.8
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 3.9e-108 395.6 231 84.8
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 3.9e-108 395.6 242 83.5
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.4e-105 387.1 241 80.9
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 1.8e-105 386.7 216 86.6
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 2.0e-104 383.3 234 79.9
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 2.6e-104 382.9 241 80.1
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 4.5e-104 382.1 208 92.3
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.6e-101 373.6 241 78.8
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 2.1e-93 346.7 285 81.1
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 1.0e-92 344.4 241 75.1
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.5e-91 340.5 181 93.4
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 2.4e-89 333.2 333 56.8
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 1.4e-86 323.9 221 73.3
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 2.5e-86 323.2 240 69.6
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 1.6e-85 320.5 228 74.1
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 1.7e-82 310.5 176 88.6
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 2.9e-79 299.7 569 37.4
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 4.2e-78 295.8 346 65.9
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 1.0e-76 291.2 173 86.7
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 1.4e-76 290.8 229 65.1
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 5.7e-75 285.4 243 66.3
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 2.8e-74 283.1 207 72.9
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.9e-70 270.4 189 71.4
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 4.0e-68 262.7 148 87.8
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 5.9e-64 248.8 247 78.1
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 8.5e-63 245.0 132 91.7
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 3.4e-59 233.0 225 57.8
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 5.0e-55 219.2 198 62.6
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 2.3e-52 210.3 107 95.3
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 5.2e-52 209.1 108 94.4
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 8.9e-52 208.4 107 95.3
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 3.4e-51 206.5 136 77.9
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 4.4e-51 206.1 231 67.5
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 9.8e-51 204.9 219 78.5
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 6.3e-50 202.2 108 89.8
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.7e-48 196.8 102 93.1
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 5.9e-48 195.7 107 88.8
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.5e-46 191.0 106 88.7
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 8.0e-45 185.3 109 84.4
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.5e-43 181.0 92 93.5
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 4.9e-42 176.0 95 91.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 4.1e-41 172.9 95 90.5
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 7.0e-41 172.2 131 70.2
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.7e-40 170.2 91 90.1
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 1.2e-37 161.4 187 64.7
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 1.3e-34 151.4 74 95.9
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 6.6e-31 139.0 71 91.5
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 6.6e-31 139.0 71 91.5
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.4e-27 126.3 91 73.6
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 7.3e-22 109.0 58 89.7
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.2e-18 97.4 132 52.3
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 3.5e-16 90.1 60 71.7
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 8.4e-10 68.9 38 86.8
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 1.4e-09 68.2 38 84.2
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 1.9e-09 67.8 50 72.0
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 6.0e-08 62.8 61 57.4
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 8.7e-07 58.9 38 76.3
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 8.7e-07 58.9 45 62.2
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 1.1e-06 58.5 38 73.7


User provided reference genes

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