Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 0.0e+00 2144.8 1109 100.0
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 0.0e+00 1993.8 1133 92.2
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 0.0e+00 1841.2 1036 91.6
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 0.0e+00 1734.5 1114 81.5
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1152.9 1129 57.9
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1151.7 1129 56.2
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1131.3 1118 57.9
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1124.4 1156 56.4
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1108.6 1129 55.4
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1107.4 1170 54.1
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1086.2 1124 56.6
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 0.0e+00 1084.3 1196 52.9
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1082.8 1137 52.0
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 7.0e-308 1060.8 1133 53.8
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 2.0e-307 1059.3 1138 53.3
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 3.8e-306 1055.0 1131 53.0
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 8.0e-304 1047.3 1128 53.9
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 4.1e-300 1035.0 1217 49.5
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 8.6e-298 1027.3 1138 54.2
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 8.6e-298 1027.3 1136 52.8
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 3.1e-295 1018.8 1130 51.4
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.6e-294 1015.8 1154 51.4
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 1.9e-292 1009.6 1242 49.5
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 6.0e-291 1004.6 1164 49.9
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.5e-281 973.4 1227 49.6
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 2.1e-280 969.5 1148 51.4
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 3.4e-278 962.2 1053 52.9
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 7.6e-278 961.1 1141 50.1
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.3e-277 960.3 1227 47.3
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 4.9e-277 958.4 1260 46.5
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 5.4e-276 954.9 1247 47.4
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.2e-275 953.7 1100 48.2
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 3.0e-274 949.1 987 53.2
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.4e-271 940.3 987 52.6
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.3e-271 938.3 1296 45.1
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.1e-268 930.6 1192 48.7
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.9e-268 929.9 1173 46.9
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.2e-268 928.7 1177 45.8
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 1.0e-266 924.1 1175 46.5
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 2.5e-265 919.5 1159 46.7
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.6e-264 916.8 1175 45.8
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.7e-261 906.7 1170 45.9
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 6.4e-261 904.8 1132 48.2
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 8.4e-261 904.4 1183 45.1
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 5.4e-260 901.7 1160 47.1
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 7.1e-260 901.4 1175 46.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 8.7e-258 894.4 1141 48.1
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 6.2e-256 888.3 1128 47.4
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 1.1e-255 887.5 1132 45.1
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.1e-255 887.5 1119 45.3
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.8e-255 886.7 1185 45.1
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 4.0e-255 885.6 1180 45.1
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 6.9e-255 884.8 1145 46.2
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.3e-253 880.6 1165 46.0
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.2e-253 879.8 1100 46.0
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 4.9e-253 878.6 1157 45.9
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 3.2e-252 875.9 1218 43.3
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 6.0e-251 871.7 1130 45.9
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.0e-250 869.4 645 66.0
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 5.1e-250 868.6 1101 47.2
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 6.7e-250 868.2 1078 46.7
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.1e-249 867.5 1166 45.9
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.1e-247 860.9 984 49.1
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 3.1e-247 859.4 1132 45.2
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 2.6e-246 856.3 1242 43.7
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 3.4e-246 855.9 1121 45.6
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 5.8e-246 855.1 1175 46.1
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 2.9e-245 852.8 930 50.5
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 8.4e-245 851.3 1170 43.8
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.2e-243 847.4 1168 44.5
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 2.1e-243 846.7 1130 45.3
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.5e-243 845.9 1246 43.2
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 8.7e-242 841.3 1123 45.1
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 5.7e-241 838.6 1256 43.2
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 6.3e-240 835.1 1158 44.1
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.8e-239 833.6 1134 44.2
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 3.4e-238 829.3 1053 46.0
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 1.0e-237 827.8 1233 41.6
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 5.0e-237 825.5 1134 44.3
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 2.1e-235 820.1 1148 44.3
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 3.6e-235 819.3 1102 44.6
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 6.1e-235 818.5 1137 43.9
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.1e-231 807.7 1149 42.9
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 1.1e-231 807.7 1127 44.2
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 2.4e-231 806.6 1130 44.3
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 3.4e-230 802.7 1158 42.9
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 3.8e-229 799.3 1255 42.4
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 5.0e-229 798.9 1070 44.7
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.7e-219 766.5 1149 42.6
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.7e-219 766.5 1149 42.6
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.6e-217 760.0 706 54.7
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 2.0e-214 750.4 1138 41.4
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 5.5e-212 742.3 636 58.2
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.4e-210 737.6 1062 44.4
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 8.5e-205 718.4 883 48.4
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.1e-204 718.0 1054 44.3
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.6e-203 713.0 1063 43.1
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 2.2e-200 703.7 1079 41.3
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 3.5e-198 696.4 984 43.1
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 1.1e-191 674.9 1058 40.4
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 4.5e-190 669.5 641 53.8
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 2.1e-187 660.6 1125 42.4
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 5.0e-181 639.4 799 47.6
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 2.1e-171 607.4 641 52.1
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 3.4e-169 600.1 936 41.9
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.4e-169 599.7 996 38.0
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 6.2e-155 552.7 507 56.0
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.1e-151 539.3 426 62.7
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.1e-146 525.4 769 43.0
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 1.8e-141 508.1 752 42.6
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 8.7e-141 505.8 820 41.6
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 4.9e-136 490.0 792 41.5
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 2.5e-119 434.5 693 37.7
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 6.5e-104 383.3 1067 31.6
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.1e-103 382.5 947 33.9
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 4.2e-103 380.6 343 55.7
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 5.5e-103 380.2 942 33.8
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 5.5e-103 380.2 728 35.7
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 4.5e-97 360.5 304 59.2
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 1.0e-96 359.4 315 57.1
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.7e-94 350.5 753 34.0
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 9.8e-92 342.8 704 36.9
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 5.7e-84 317.0 269 56.5
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.8e-83 314.7 293 54.3
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.0e-65 255.4 358 40.2
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.8e-61 242.3 407 35.4
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.9e-55 222.2 450 41.8
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.7e-33 148.7 595 28.2
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 3.0e-32 145.2 530 27.4
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 3.1e-29 135.2 300 34.3
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 2.0e-28 132.5 294 28.2
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 5.6e-23 114.4 227 32.2
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 2.5e-10 72.4 114 40.4
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 9.3e-10 70.5 82 47.6
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 2.1e-09 69.3 111 41.4
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 2.2e-06 59.3 38 73.7
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 2.2e-06 59.3 38 73.7


User provided reference genes

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