Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 3.0e-117 425.2 219 100.0
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.6e-107 391.7 219 91.3
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.4e-106 389.8 219 89.5
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.0e-101 373.6 219 84.9
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.6e-83 313.2 219 74.0
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 6.2e-83 311.2 220 73.6
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 5.8e-81 304.7 219 72.1
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 6.4e-80 301.2 219 71.7
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.1e-79 300.4 220 70.9
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 1.9e-79 299.7 219 68.9
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 3.2e-79 298.9 219 69.9
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.2e-78 297.0 218 69.3
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.3e-77 293.5 220 68.2
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.7e-77 293.1 220 69.1
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 6.6e-77 291.2 220 69.1
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 7.4e-76 287.7 223 67.3
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.3e-75 287.0 219 68.9
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 3.1e-74 282.3 221 67.0
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.3e-74 281.6 220 68.6
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 5.3e-74 281.6 220 68.6
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.5e-73 280.0 219 66.2
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-73 279.6 220 68.6
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.4e-73 278.9 219 66.2
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.5e-73 278.5 220 67.7
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.5e-73 278.5 220 67.7
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.5e-73 278.5 220 67.7
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.8e-73 278.1 220 67.7
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 5.8e-73 278.1 208 70.2
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 7.6e-73 277.7 219 67.1
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 7.6e-73 277.7 219 66.7
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.7e-72 276.6 219 63.9
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.7e-72 276.6 220 67.3
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.7e-72 276.6 220 67.3
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.8e-72 275.4 220 67.3
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.4e-72 274.6 220 66.8
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 3.2e-71 272.3 249 60.6
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 7.1e-71 271.2 211 64.9
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 9.3e-71 270.8 212 64.6
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.2e-70 270.4 219 65.8
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.6e-70 270.0 224 65.6
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 2.1e-70 269.6 148 95.9
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.7e-70 269.2 222 63.1
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 6.0e-70 268.1 224 64.3
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 7.9e-70 267.7 219 64.8
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.8e-69 266.5 223 64.6
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 3.9e-69 265.4 223 62.3
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 3.3e-68 262.3 223 61.9
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 9.6e-68 260.8 223 61.9
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 2.1e-67 259.6 223 61.4
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 2.8e-67 259.2 223 61.0
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 3.7e-67 258.8 223 61.9
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 6.2e-67 258.1 223 61.9
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 8.1e-67 257.7 219 63.0
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.4e-66 256.9 219 61.6
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 3.1e-66 255.8 219 62.1
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 3.1e-66 255.8 223 61.4
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 4.0e-66 255.4 219 61.6
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 4.0e-66 255.4 221 62.0
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 1.2e-65 253.8 225 63.1
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.5e-65 253.4 218 61.0
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 2.6e-65 252.7 225 60.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 4.5e-65 251.9 225 60.0
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 5.8e-65 251.5 222 63.5
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.0e-64 250.8 218 61.0
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 1.7e-64 250.0 218 60.6
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 1.7e-64 250.0 219 62.1
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.7e-64 250.0 218 61.0
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.2e-64 249.6 225 61.3
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 4.9e-64 248.4 221 60.2
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 6.5e-64 248.1 225 57.8
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 8.4e-64 247.7 219 61.6
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 8.4e-64 247.7 218 60.6
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 8.4e-64 247.7 219 63.5
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 1.1e-63 247.3 218 60.1
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 1.1e-63 247.3 218 60.1
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.1e-63 247.3 216 60.2
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.4e-63 246.9 219 60.7
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.9e-63 246.5 218 59.6
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 5.5e-63 245.0 218 59.6
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 5.5e-63 245.0 223 61.9
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 7.1e-63 244.6 218 59.6
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 7.1e-63 244.6 216 62.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 7.1e-63 244.6 219 60.7
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 9.3e-63 244.2 222 60.4
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 9.3e-63 244.2 230 58.3
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.2e-62 243.8 218 59.2
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.2e-62 243.8 221 61.5
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.2e-62 243.8 230 58.3
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 1.6e-62 243.4 218 59.2
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 2.1e-62 243.0 219 60.7
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.1e-62 243.0 227 59.9
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 4.6e-62 241.9 186 68.8
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 1.8e-61 240.0 226 58.0
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 4.3e-60 235.3 210 62.9
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 5.7e-60 235.0 232 56.0
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 7.4e-60 234.6 219 59.8
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.6e-59 233.4 233 57.1
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.1e-59 233.0 208 62.0
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 2.1e-59 233.0 221 58.8
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.7e-59 232.3 235 55.7
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.4e-58 230.3 264 50.0
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-58 230.3 198 64.1
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 6.9e-58 228.0 255 53.7
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 9.0e-58 227.6 216 56.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.6e-57 226.1 185 63.8
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.6e-57 226.1 218 57.8
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.2e-56 223.0 219 55.3
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.1e-55 220.7 257 51.4
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 5.5e-55 218.4 208 56.2
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 9.3e-55 217.6 234 52.1
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 2.1e-54 216.5 204 58.8
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 4.6e-54 215.3 185 63.8
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.3e-53 213.8 266 50.4
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-53 213.0 166 68.1
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 1.9e-52 209.9 195 58.5
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 2.5e-52 209.5 219 53.9
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 7.4e-52 208.0 227 53.7
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.7e-48 196.8 151 70.2
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 2.2e-48 196.4 349 37.5
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 3.8e-48 195.7 197 54.8
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.2e-46 190.7 252 45.6
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 3.0e-45 186.0 194 54.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 5.1e-45 185.3 214 52.3
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 2.0e-44 183.3 168 57.7
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.3e-42 175.3 148 64.2
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.6e-41 172.9 183 55.7
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.7e-40 170.2 138 65.2
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 2.2e-40 169.9 139 67.6
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 2.5e-39 166.4 175 54.3
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 3.9e-37 159.1 134 64.9
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 7.4e-36 154.8 146 60.3
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 3.7e-35 152.5 97 79.4
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.8e-34 150.2 118 69.5
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 9.1e-34 147.9 125 67.2
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 9.4e-31 137.9 141 57.4
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.8e-27 125.6 94 68.1
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.4e-26 124.0 193 41.5
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 5.3e-26 122.1 186 38.2
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 5.9e-25 118.6 127 52.8
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.5e-23 114.0 182 37.9
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 3.0e-21 106.3 91 62.6
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 3.4e-20 102.8 200 34.5
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 2.2e-19 100.1 151 46.4
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 4.1e-18 95.9 184 37.0
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.7e-17 93.2 68 66.2
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 7.2e-15 85.1 95 48.4
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.4e-13 80.9 139 39.6
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.4e-13 80.9 95 46.3
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.6e-12 76.6 50 72.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.8e-06 56.6 59 50.8
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 8.0e-06 55.1 67 55.2


User provided reference genes

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