Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 2336.6 1317 100.0
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 2315.4 1317 97.4
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 2228.4 1317 91.2
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 2212.2 1365 90.8
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 2100.9 1317 83.4
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 2060.4 1303 82.6
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 2041.2 1317 80.9
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 2016.5 1317 80.3
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1989.9 1317 78.9
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1916.0 1317 76.4
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1902.9 1317 77.5
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1890.9 1321 76.3
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1882.8 1549 67.4
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1873.6 1317 75.6
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1870.5 1317 75.4
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1869.7 1317 74.7
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1869.4 1317 75.0
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1867.8 1317 74.8
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1857.8 1436 70.2
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1854.3 1317 74.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1845.1 1317 73.7
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1823.9 1317 72.9
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1823.5 1317 72.3
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1815.0 1317 71.5
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1810.4 1317 71.6
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1808.1 1317 72.1
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1799.3 1317 72.2
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1784.6 1318 72.8
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1780.8 1317 70.1
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1770.7 1317 71.1
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1770.0 1317 72.1
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1757.7 1317 70.4
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1755.3 1317 71.5
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1753.8 1317 70.2
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1743.4 1343 71.3
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1736.1 1317 69.5
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1736.1 1317 68.9
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1733.4 1317 70.5
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1729.9 1317 69.8
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1726.8 1210 75.0
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1726.1 1303 70.7
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1725.7 1317 71.8
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1718.7 1317 70.0
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1716.8 1317 69.4
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1709.9 1325 69.9
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1709.1 1318 68.2
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1699.9 1340 68.2
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1699.9 1370 66.6
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1698.3 1317 69.0
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1694.9 1317 68.5
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1694.5 1317 67.3
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1693.3 1317 69.9
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1692.9 1332 68.3
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1692.9 1317 69.2
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1692.6 1332 68.3
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1692.6 1359 67.3
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1681.4 1317 70.5
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1669.1 1210 73.4
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1661.4 1401 65.1
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1659.8 1261 70.5
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1638.6 1337 66.4
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1609.7 1303 66.8
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1604.0 1254 67.6
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1601.3 1317 64.7
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1600.5 1317 66.5
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1600.1 1318 65.8
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1597.4 1318 65.6
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1597.0 1318 65.6
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1577.0 1318 65.7
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1570.8 1303 64.9
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1559.7 1317 62.9
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1546.9 1370 63.1
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1539.6 1317 62.0
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1536.9 1317 62.6
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1532.7 1303 63.8
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1241.5 1317 51.6
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1134.4 1317 48.3
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1131.7 1062 57.7
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 0.0e+00 1117.4 900 66.8
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 9.0e-312 1074.7 1313 46.5
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.4e-310 1070.1 1025 59.0
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 5.8e-309 1064.7 759 74.7
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 2.1e-306 1056.2 742 73.7
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.1e-302 1042.3 886 62.0
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 3.5e-298 1028.9 1018 55.7
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.1e-288 997.3 767 69.4
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.0e-281 974.2 1316 45.0
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.9e-267 926.8 995 52.6
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.6e-266 923.7 669 75.8
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 7.6e-261 904.8 1252 44.1
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 2.2e-255 886.7 729 65.2
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 3.4e-253 879.4 790 62.7
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.3e-252 877.5 631 71.5
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.7e-252 877.1 631 71.5
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 5.1e-249 865.5 761 60.7
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 6.5e-244 848.6 728 61.8
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.4e-241 840.9 594 75.3
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.4e-241 840.9 594 75.3
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 6.3e-231 805.4 631 71.5
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.7e-218 763.5 1272 38.8
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.2e-213 748.0 558 72.0
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 8.9e-201 705.3 735 55.6
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 3.2e-182 643.7 593 60.9
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 6.6e-164 582.8 350 86.6
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 2.1e-162 577.8 1370 32.5
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 6.9e-153 546.2 356 78.4
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 8.7e-148 529.3 524 58.4
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 3.0e-140 504.2 296 86.8
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 5.7e-139 500.0 1390 32.2
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.9e-134 485.0 1332 30.4
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.3e-127 462.2 444 59.2
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 3.9e-124 450.7 457 56.2
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.6e-123 448.0 385 61.6
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 2.8e-122 444.5 394 62.2
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 4.8e-122 443.7 1335 26.9
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.1e-121 440.7 244 91.0
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.0e-121 439.9 222 97.3
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 2.1e-117 428.3 264 84.5
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 1.4e-113 415.6 224 91.1
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.0e-100 370.9 436 55.0
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.8e-97 362.1 853 35.3
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 2.9e-95 354.8 187 94.7
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.7e-90 339.0 223 78.9
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 2.0e-88 332.0 308 59.4
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 6.2e-85 320.5 227 70.5
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.3e-63 249.6 126 94.4
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.9e-54 219.2 140 82.9
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 2.6e-51 208.8 192 60.4
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.5e-51 208.0 139 81.3
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.5e-46 193.0 170 60.6
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 4.3e-38 164.9 165 55.2
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.3e-38 164.9 87 95.4
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 6.9e-36 157.5 106 79.2
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.9e-33 149.4 72 94.4
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 7.1e-33 147.5 141 57.4
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 7.9e-32 144.1 114 65.8
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.0e-23 115.5 100 64.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.3e-21 110.2 64 85.9
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 6.3e-21 107.8 90 64.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 8.2e-21 107.5 64 81.2
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.4e-20 106.7 106 59.4
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 6.7e-15 87.8 131 42.0
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-13 83.6 216 31.5
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 2.2e-13 82.8 90 52.2
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 3.7e-13 82.0 77 57.1
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 2.9e-10 72.4 281 26.0
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 8.5e-10 70.9 63 65.1
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 2.1e-08 66.2 61 65.6
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 2.7e-08 65.9 56 69.6
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 2.0e-06 59.7 33 87.9


User provided reference genes

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