Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 3.9e-158 561.6 322 100.0
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.6e-151 539.7 320 97.2
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 5.6e-141 504.6 320 91.6
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 5.8e-138 494.6 301 95.7
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 8.7e-134 480.7 321 88.2
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.0e-118 430.6 320 82.5
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.0e-118 430.6 320 82.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 1.0e-118 430.6 320 78.4
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 3.9e-118 428.7 320 80.3
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 8.7e-118 427.6 321 79.4
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.1e-117 427.2 320 77.5
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 2.5e-117 426.0 324 76.9
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 1.6e-116 423.3 322 75.8
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 3.7e-116 422.2 323 77.4
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.7e-116 422.2 320 79.1
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 1.1e-115 420.6 320 79.1
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.8e-115 419.9 327 74.3
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.4e-115 419.5 281 85.1
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 3.1e-115 419.1 312 78.8
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 3.1e-115 419.1 322 77.0
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 4.1e-115 418.7 320 78.1
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.1e-115 418.7 320 75.9
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 5.3e-115 418.3 325 75.4
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 9.0e-115 417.5 320 75.6
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 9.0e-115 417.5 322 76.7
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.2e-114 417.2 321 75.4
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.0e-114 416.4 320 77.5
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 2.6e-114 416.0 322 76.7
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.5e-114 415.2 326 75.2
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.5e-114 415.2 325 76.3
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 5.9e-114 414.8 322 76.4
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 7.7e-114 414.5 326 77.0
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.0e-113 414.1 322 76.4
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.3e-113 413.7 320 75.6
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 1.7e-113 413.3 320 77.2
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.7e-113 413.3 321 75.1
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.7e-113 413.3 321 74.8
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 2.2e-113 412.9 321 75.1
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 3.8e-113 412.1 320 74.4
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 5.0e-113 411.8 283 80.6
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 8.5e-113 411.0 321 75.4
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 1.1e-112 410.6 331 73.4
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.4e-112 410.2 314 77.1
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.4e-112 410.2 320 74.7
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.9e-112 409.8 312 77.9
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.5e-112 409.5 322 76.1
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 3.2e-112 409.1 322 75.5
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 3.2e-112 409.1 323 74.3
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 4.2e-112 408.7 331 75.8
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 5.5e-112 408.3 323 75.5
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 7.2e-112 407.9 323 74.9
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 7.2e-112 407.9 323 75.5
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 9.4e-112 407.5 337 72.7
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 1.6e-111 406.8 323 73.1
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 2.1e-111 406.4 322 73.3
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 2.1e-111 406.4 285 81.8
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 3.6e-111 405.6 324 75.3
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 4.6e-111 405.2 311 76.8
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 4.6e-111 405.2 324 74.4
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 7.9e-111 404.4 311 77.2
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.4e-110 403.7 303 78.2
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 2.3e-110 402.9 320 74.1
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 2.3e-110 402.9 355 69.9
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 6.7e-110 401.4 320 75.6
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 8.8e-110 401.0 325 76.0
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.1e-109 400.6 326 73.9
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 1.1e-109 400.6 321 73.8
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 2.5e-109 399.4 303 78.5
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 2.5e-109 399.4 328 72.9
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.5e-109 399.4 320 75.3
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 2.5e-109 399.4 324 71.9
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 3.3e-109 399.1 325 74.5
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 3.3e-109 399.1 330 72.1
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 4.3e-109 398.7 293 79.9
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.3e-109 398.7 320 73.1
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 4.3e-109 398.7 334 72.8
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.4e-109 397.9 320 73.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 9.7e-109 397.5 301 77.4
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 9.7e-109 397.5 301 77.4
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 9.7e-109 397.5 320 73.8
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.7e-108 396.7 326 73.9
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.7e-108 396.7 321 72.3
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.2e-108 396.4 326 73.0
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 2.8e-108 396.0 315 74.6
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 2.8e-108 396.0 315 74.6
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.7e-108 395.6 307 75.6
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 3.7e-108 395.6 320 73.1
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 3.7e-108 395.6 324 75.0
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 6.3e-108 394.8 322 73.0
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 6.3e-108 394.8 325 74.8
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 6.3e-108 394.8 323 74.6
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 8.2e-108 394.4 323 73.1
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 8.2e-108 394.4 322 73.3
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.4e-107 393.7 325 71.4
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 2.4e-107 392.9 315 74.0
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 2.4e-107 392.9 321 72.0
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.4e-107 392.9 320 73.1
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 3.1e-107 392.5 313 74.1
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 4.1e-107 392.1 326 71.2
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 4.1e-107 392.1 307 75.2
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 4.1e-107 392.1 320 72.8
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 5.3e-107 391.7 315 74.0
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.3e-107 391.7 322 73.3
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 6.9e-107 391.3 375 65.3
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.2e-106 390.6 321 72.9
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 2.0e-106 389.8 272 80.1
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 3.4e-106 389.0 320 71.9
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 7.7e-106 387.9 325 73.2
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.0e-105 387.5 321 71.7
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-105 387.1 321 71.7
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-105 387.1 321 71.7
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.3e-105 387.1 321 71.7
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.3e-105 387.1 321 71.7
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 1.3e-105 387.1 323 72.4
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.3e-105 387.1 322 72.4
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.7e-105 386.7 324 71.6
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.7e-105 386.7 324 72.5
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.9e-105 386.0 254 85.0
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 2.9e-105 386.0 321 71.7
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.9e-105 386.0 323 72.1
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.9e-105 386.0 325 72.6
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 3.8e-105 385.6 321 71.7
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.1e-104 384.0 326 72.4
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.9e-104 383.3 321 74.1
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 7.2e-104 381.3 326 71.8
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-103 380.6 310 73.9
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 1.2e-103 380.6 324 71.0
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.6e-103 380.2 330 70.3
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 3.0e-102 375.9 323 71.8
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 5.1e-102 375.2 310 72.9
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.1e-102 375.2 306 66.3
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.1e-101 374.0 299 74.2
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.1e-101 374.0 300 74.3
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.4e-101 372.1 255 74.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.7e-100 369.0 320 69.7
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.8e-99 366.7 256 82.8
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.8e-99 366.7 314 71.7
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 2.6e-98 362.8 302 73.2
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.3e-97 360.5 327 67.3
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 2.5e-96 356.3 330 67.3
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.2e-95 354.0 303 70.0
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 8.0e-95 351.3 226 90.3
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 2.3e-94 349.7 268 72.4
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 5.7e-93 345.1 227 87.7
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.2e-90 337.4 304 70.4
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.7e-90 336.3 324 57.7
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.5e-88 329.7 226 82.7
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 9.4e-88 327.8 331 66.2
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.4e-86 323.9 292 64.7
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 4.0e-86 322.4 353 60.1
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 2.4e-83 313.2 322 59.0
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 4.7e-79 298.9 272 63.2
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 3.0e-78 296.2 251 60.2
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.7e-76 290.4 221 78.7
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.8e-75 287.0 196 85.2
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 9.2e-75 284.6 250 57.6
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.7e-74 281.6 248 60.9
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.0e-73 281.2 263 71.5
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 1.3e-73 280.8 248 76.2
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.0e-69 266.9 235 75.3
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 3.0e-57 226.5 271 45.8
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.6e-55 220.7 265 48.7
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 5.2e-54 215.7 145 73.8
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.0e-50 202.2 120 80.0
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.1e-48 198.0 120 80.8
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 4.3e-48 196.1 144 70.1
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 4.0e-46 189.5 204 67.6
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 5.8e-45 185.7 195 69.2
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.6e-40 168.3 122 72.1
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 7.8e-34 148.7 96 78.1
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 3.0e-33 146.7 126 67.5
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.1e-32 144.8 86 81.4
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.1e-31 140.6 108 76.9
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.4e-30 137.1 256 37.5
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 6.0e-26 122.5 76 78.9
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 3.4e-21 106.7 159 55.3
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 3.0e-17 93.6 107 65.4
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 8.7e-17 92.0 148 43.9
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.5e-16 90.5 83 80.7
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 2.1e-15 87.4 160 51.9
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.8e-09 67.8 88 44.3
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 3.1e-06 57.0 36 83.3
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 9.0e-06 55.5 76 34.2


User provided reference genes

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