Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 2.5e-250 868.2 414 100.0
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 7.3e-242 840.1 414 96.4
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 4.4e-239 830.9 414 94.7
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.8e-224 782.3 414 88.2
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.8e-195 686.0 413 77.7
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.7e-190 669.5 398 77.4
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 3.8e-190 668.3 413 76.5
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 6.5e-190 667.5 413 75.5
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 1.1e-189 666.8 417 75.3
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 3.2e-189 665.2 401 76.6
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.2e-188 663.3 409 74.6
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 2.1e-188 662.5 403 75.9
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 4.6e-188 661.4 413 73.4
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 2.3e-187 659.1 414 73.4
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 5.1e-187 657.9 400 75.5
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 6.7e-187 657.5 403 75.4
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.5e-186 656.4 417 75.8
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.9e-186 656.0 369 79.4
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 5.7e-186 654.4 405 74.1
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.8e-184 649.4 402 75.4
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 4.1e-184 648.3 404 75.0
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 6.9e-184 647.5 402 74.6
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 2.0e-183 646.0 416 72.8
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 1.0e-182 643.7 411 74.0
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 3.8e-182 641.7 405 74.3
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 6.5e-182 641.0 408 73.8
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 8.4e-182 640.6 402 74.1
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.5e-181 639.0 413 73.6
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 3.2e-181 638.6 413 73.6
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 4.2e-181 638.3 416 72.6
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 5.5e-181 637.9 412 72.8
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 6.1e-180 634.4 408 72.5
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 3.0e-179 632.1 404 71.3
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 3.0e-179 632.1 373 78.8
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 3.9e-179 631.7 403 72.2
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 3.9e-179 631.7 417 71.0
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 5.1e-179 631.3 407 72.7
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.1e-178 630.2 413 70.9
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.5e-178 629.8 401 73.1
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.5e-178 629.8 406 71.7
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.3e-178 628.2 404 71.5
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.8e-177 625.5 409 72.1
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 1.1e-176 623.6 415 71.3
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 3.1e-176 622.1 458 65.3
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 5.3e-176 621.3 390 72.6
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.5e-175 619.8 384 74.0
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 2.0e-175 619.4 418 69.9
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 2.9e-174 615.5 413 69.5
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 3.8e-174 615.1 417 70.3
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 6.5e-174 614.4 417 69.3
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 4.2e-173 611.7 361 74.5
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 7.2e-173 610.9 421 68.9
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 7.2e-173 610.9 416 69.7
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 6.1e-172 607.8 416 70.0
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.0e-171 607.1 407 70.5
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 3.0e-171 605.5 405 69.1
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 2.0e-170 602.8 339 80.5
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 2.0e-170 602.8 406 70.7
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 4.8e-169 598.2 416 68.5
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.4e-168 596.7 406 69.5
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 2.4e-168 595.9 405 66.9
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 5.3e-168 594.7 460 63.0
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 2.6e-167 592.4 413 68.8
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 2.9e-166 589.0 417 66.9
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 3.2e-165 585.5 403 69.0
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 3.2e-165 585.5 402 66.9
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 4.2e-165 585.1 408 69.6
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 3.6e-164 582.0 414 66.4
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.8e-163 579.7 415 67.2
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.8e-163 579.7 406 66.5
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 3.0e-163 578.9 414 66.4
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 3.0e-163 578.9 406 67.2
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 2.6e-162 575.9 408 65.7
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 3.7e-161 572.0 409 65.3
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 3.7e-161 572.0 404 65.3
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 4.8e-161 571.6 403 66.5
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.8e-160 569.7 413 65.1
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.4e-160 569.3 408 65.9
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 5.3e-160 568.2 411 64.7
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 2.6e-159 565.8 367 70.6
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 4.5e-159 565.1 363 71.9
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 7.7e-159 564.3 403 63.3
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 5.0e-158 561.6 369 69.1
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 1.5e-157 560.1 419 64.4
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.2e-156 557.0 419 64.0
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 6.1e-156 554.7 342 73.1
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.3e-155 552.7 373 70.2
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 4.1e-152 542.0 303 80.5
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.6e-148 528.9 361 69.5
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 8.0e-148 527.7 361 69.5
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.0e-147 527.3 368 69.6
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 3.4e-146 522.3 439 60.4
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 3.1e-144 515.8 379 65.2
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 2.2e-142 509.6 420 61.0
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 8.5e-142 507.7 406 61.1
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.6e-140 503.4 336 69.0
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-136 490.3 362 65.2
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.4e-136 488.4 408 61.3
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 5.0e-134 481.9 352 65.1
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.9e-133 479.9 419 54.9
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.6e-132 476.9 352 64.8
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-131 474.2 406 59.1
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.6e-130 469.5 307 72.6
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 1.3e-129 467.2 417 54.9
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 4.9e-129 465.3 311 71.1
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 4.1e-128 462.2 370 58.1
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 7.0e-128 461.5 370 58.4
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.5e-125 453.8 413 53.3
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.2e-124 450.7 382 58.9
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 6.4e-121 438.3 409 52.8
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 2.4e-120 436.4 320 64.4
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 2.1e-116 423.3 388 55.4
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.2e-116 421.8 247 77.7
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.5e-114 414.8 415 53.5
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 1.5e-109 400.6 446 47.1
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 4.7e-108 395.6 274 69.7
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 4.7e-108 395.6 253 74.7
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 1.2e-103 380.9 265 67.2
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 8.1e-100 368.2 283 57.6
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-99 366.7 272 64.3
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 5.8e-98 362.1 416 45.2
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.1e-96 355.1 339 55.2
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 9.3e-96 354.8 205 78.0
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 3.9e-94 349.4 199 80.4
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.5e-90 335.9 202 78.2
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.2e-88 329.3 202 76.2
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.7e-87 326.6 212 73.6
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.1e-76 290.4 404 41.1
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 4.8e-76 289.3 167 79.0
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.1e-75 288.1 294 45.6
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 1.8e-67 260.8 165 72.1
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-63 248.1 194 64.9
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-63 246.1 144 79.2
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-63 246.1 144 79.2
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-63 246.1 144 79.2
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.1e-62 242.7 144 78.5
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.9e-59 232.3 154 71.4
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 1.1e-51 208.4 260 44.6
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-49 201.1 187 54.0
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 1.4e-46 191.4 115 74.8
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.0e-43 179.1 96 81.2
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 1.3e-36 158.3 86 81.4
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.8e-35 154.5 100 69.0
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 2.2e-33 147.5 108 65.7
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 2.6e-29 134.0 84 70.2
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.1e-27 126.7 75 77.3
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-22 111.3 62 74.2
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 6.6e-17 92.8 74 55.4
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 3.6e-15 87.0 47 85.1
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-14 85.1 142 36.6
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.5e-10 70.5 43 65.1
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-10 70.1 55 47.3
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 5.9e-10 69.7 36 86.1
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 1.7e-09 68.2 66 51.5
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 3.3e-08 63.9 51 49.0


User provided reference genes

Program Settings